Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060832.seq
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 58 2e-09
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 30 0.36
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.5
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 4.4
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 5.9
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 26 5.9
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 25 7.8
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 7.8
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 57.6 bits (133), Expect = 2e-09
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +3
Query: 525 LLQEVTIKSFLLSKGPQFAITIKKLETDLTSDMLLSGSWKTLEFKPYNFDALG 683
L++ I F L KGP F++ I+KL TDLT++M+ S SW++ +FK YNF A G
Sbjct: 163 LVERNKIMYFSLRKGPNFSLQIEKLNTDLTAEMITSRSWESAKFKSYNFAAEG 215
Score = 51.2 bits (117), Expect = 1e-07
Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Frame = +1
Query: 250 CYNGSHEAVLYRSI--PDSGVPQSEAMKMVPN-AKVGFSKAMSSGWIYIDKSSGPPLVKR 420
C NGSHEA +Y I SG+ E K + N A +G +A GWI K G LVK
Sbjct: 72 CANGSHEAKVYNEICASMSGLNIGELKKKLGNSAGIGQGRAFKLGWI---KKDGDKLVK- 127
Query: 421 KVDSITDIVQENLSEIRKGIDNLSENVRNAIKKGNFYKR*PLKASCCRRAPN 576
DSITD + LSEI++ +KK +R + R+ PN
Sbjct: 128 NTDSITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKGPN 179
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 29.9 bits (64), Expect = 0.36
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +1
Query: 298 SGVPQSEAMKMVPNAKVGFSKAMSSGWIYIDKSSGPPLVKRKVDSITDIVQENLSEIRKG 477
SG S A K + K G +SS W+ D++ ++KR +DS+ S IR G
Sbjct: 89 SGTFHSIAYKYL--VKYGKHIGLSSNWLIADRNDTQAIMKRLLDSLKKAKNPIASGIR-G 145
Query: 478 IDNLSENVRNAIKK 519
+ +N N I K
Sbjct: 146 QELTPQNALNRITK 159
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 29 LKYSGEELKMELNERILKYLENSDKA--DTLKLCEEFNEEHQKIVGAVKSLEAL 184
L+ SG LK E + LK KA + LK + F+E+HQ+++GA+ + L
Sbjct: 440 LRISGS-LKEEQSYYGLKNSIKQIKAFENKLKYIQSFHEKHQQLIGALSEVYGL 492
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -3
Query: 527 KFPFFIAFLTFSDKLSIPFLISLRFSCTMSVIESTLRLTRGGPLDLSMYIHPDDMAL 357
KFP+ A TFSDK S F R++ T S + G +D +++ D +A+
Sbjct: 133 KFPYAYATFTFSDKPS--FTSIYRWNVTNSNVTIEHFYNVKGNVDSLFFLNNDSVAI 187
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 41 GEELKMELNERILKYLENSDKADTLKLCEEF 133
G E+++ + E L+YLE DT+K EF
Sbjct: 171 GTEIRLFMKEDQLQYLEEKTIKDTVKKHSEF 201
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 355 SKAMSSGWIYIDKSSGPPLVKRKVDSITDIVQENLSEIRKGIDNLSENVRNAIKK 519
SK S ++DKSSG ++ +S +D + E+ S + + I ++R++ K
Sbjct: 154 SKHRKSRNKFLDKSSGSMEIESWDNSTSDSIIESSSRLHESISLRENDIRSSDSK 208
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.4 bits (53), Expect = 7.8
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +2
Query: 35 YSGEELKME-LNERILKYLENSDKADTLKLCEEFNEEH--QKIVGAVKS--LEALEMVIS 199
Y GE LK+ L K+L++ + L + H +K+ A + L+MV++
Sbjct: 596 YIGENLKITTLQSSGRKWLDSLSSSLPSSLLNRGSSTHSWEKLTNASTEEVMLPLDMVVN 655
Query: 200 EAVKITKWELTEEGELVAIMVATKPYYTEVYQ 295
E ++ + E+ L+ + P YT++ Q
Sbjct: 656 ELLEKSPKVFPEDSRLLFAEQSRHPKYTDIIQ 687
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 415 KRKVDSITDIVQENLSEIRKGIDNLSENVRNAIKKGNFYK 534
K++VD + +++IR ++ E + + KGN+Y+
Sbjct: 265 KKEVDFFPVDLSAEITDIRDRFSSILEPMLQKLNKGNYYR 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,811
Number of Sequences: 5004
Number of extensions: 52897
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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