Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060832.seq
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0116 - 13022648-13022701,13022781-13022835,13023050-130231...    57   1e-08
12_02_1261 + 27410921-27413401                                         29   3.5  
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358...    29   3.5  
08_02_0075 - 11953723-11956203,11958213-11958512                       29   4.6  
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062...    28   6.0  
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893...    28   8.0  

>10_07_0116 -
           13022648-13022701,13022781-13022835,13023050-13023175,
           13023274-13023340,13024104-13024200,13024362-13024461,
           13024527-13024611,13024679-13024755,13024888-13024926,
           13025001-13025038,13025118-13025208,13025536-13025628,
           13025726-13025781,13025844-13025915,13026078-13026134,
           13026397-13026495,13026599-13026964
          Length = 523

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/44 (59%), Positives = 29/44 (65%)
 Frame = +3

Query: 552 FLLSKGPQFAITIKKLETDLTSDMLLSGSWKTLEFKPYNFDALG 683
           + L KGPQF    KKL TD+T + L SG WK LEFK YNF A G
Sbjct: 222 YALKKGPQFVAKRKKLATDVTQEHLRSGDWKDLEFKDYNFGAQG 265


>12_02_1261 + 27410921-27413401
          Length = 826

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 256 NGSHEAVLYRSIPDSG--VPQSEAMKMVPNAKVGFSKAMSSGWIYIDKSSGPPLVKRK 423
           NG++ A    S+ D G    Q    KMVP A V  S   ++   + D +   P  K+K
Sbjct: 604 NGTNVAAASNSLKDEGQRADQPSLKKMVPGANVNHSSGEATNSAFPDIAYSTPKKKKK 661


>06_03_0749 +
           24133302-24134274,24134585-24135272,24135751-24135857,
           24137565-24137815
          Length = 672

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 391 KSSGPPLVKRKVDSITDIVQENLSEIRKGIDNLSENVRNAIKKGNFY 531
           K+SG P  KRK+  + D  +EN   + K +D  +    +A  +G  +
Sbjct: 312 KTSGSPPSKRKLKDLVDTKKENNQAVSKTVDEKNGPASSAKAQGTHH 358


>08_02_0075 - 11953723-11956203,11958213-11958512
          Length = 926

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 409 LVKRKVDSITDIVQENLSEIRKGIDNLSENVRNAI 513
           L+  K+D+I    Q+  ++ R+ +DN +EN RN +
Sbjct: 154 LLLDKLDAIKQAAQDASTDKRETVDNFTENPRNKV 188


>04_04_0294 +
           24204563-24204748,24205531-24205620,24205980-24206211,
           24207180-24207457,24207576-24207647,24208054-24208295,
           24208781-24209197,24209296-24209497,24209624-24209738,
           24209821-24209906,24210235-24210354,24210431-24210519,
           24210588-24210669,24211072-24211263,24211546-24211668
          Length = 841

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 59  ELNERILKYLENSDKADTLKLCEEFNEEHQKIV 157
           +L E I+ Y E+S   + LK C E+  +H K+V
Sbjct: 356 KLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLV 388


>05_06_0131 -
           25888434-25888931,25889105-25889155,25889249-25889331,
           25889733-25889826,25890188-25890310,25890909-25891154
          Length = 364

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 38  SGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEA 181
           S  +L   LN R L  +ENS++  + K CEE +E   ++  +   +++
Sbjct: 199 SAVKLFSNLNTRCLS-IENSNQTHSAKSCEESSEPFSRLASSCHQIQS 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,034
Number of Sequences: 37544
Number of extensions: 299325
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)