Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060832.seq
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_33952| Best HMM Match : Lectin_C (HMM E-Value=3.1) 32 0.50
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 32 0.50
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2) 31 1.2
SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10) 29 3.5
SB_18820| Best HMM Match : FCH (HMM E-Value=5.4e-20) 29 3.5
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 28 8.1
>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 NGSHEAVLYRSIPDSGVPQSEAMKMVPNAKVGFSKAMSSGWIYIDK-SSGPPLVKRKVDS 432
NGSHEA ++ +IP+ G+PQS + +A +GFSKAMSSGW+ IDK + G P V +KV+
Sbjct: 41 NGSHEAWVFDAIPEGGMPQSNIKSLGEHANIGFSKAMSSGWLRIDKQAEGGPRVFKKVEK 100
Query: 433 ITDIVQENLSEI 468
I D VQ L ++
Sbjct: 101 IDDSVQLMLLKV 112
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/53 (58%), Positives = 42/53 (79%)
Frame = +3
Query: 525 LLQEVTIKSFLLSKGPQFAITIKKLETDLTSDMLLSGSWKTLEFKPYNFDALG 683
L+ IKSF ++KG F++++++LE DLT+DMLLSGSW+ EFK YNFDALG
Sbjct: 133 LVTTQVIKSFYVTKGKAFSLSVQRLEADLTADMLLSGSWRDKEFKAYNFDALG 185
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +2
Query: 59 ELNERILKYLENSDKADT-LKLCEEFNEEHQKIVGAVKSLE-ALEMV--ISEAVKITKWE 226
+LN LK + D+ D +K+C+EF H+++VG + +E +E + +SE V T+ +
Sbjct: 1855 DLNAGKLKRVR--DRVDQQVKMCDEFAPLHEEVVGWLAEMEPVVENMRPVSEDVHATRQQ 1912
Query: 227 LTEEGELVAIMVATKP 274
L E ++ +AT+P
Sbjct: 1913 LQEIRDINDQFLATRP 1928
>SB_33952| Best HMM Match : Lectin_C (HMM E-Value=3.1)
Length = 311
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 256 NGSHEAVLYRSIPDSGVPQS 315
NGSHEA ++ +IP+ G+PQS
Sbjct: 289 NGSHEAWVFDAIPEGGMPQS 308
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Frame = +2
Query: 38 SGEELKMELNERILKYLEN-SDKADTLKLCEEFNE--EHQKIVGAV-KSL-EALEMV--I 196
S E +E E+++ L+ + + + C + + ++ K VG+V K L E E + I
Sbjct: 643 SNESALLEKREKVMLELDKLKRRIEEFRECGDLDMMVQYVKDVGSVQKKLGECTETIGYI 702
Query: 197 SEAVKITKWELTEEGELVAIMVATKPYYTEVYQTVV 304
+E + KWE TE E+ +I A +P Y +++ TV+
Sbjct: 703 NEEEDLFKWERTEYPEVESITKAIEP-YQKLFTTVM 737
>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 689
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +1
Query: 385 IDKSSGPPLVKRKVDSITDIVQENLSEIRKGIDNLSENVRNAIKKGNF 528
+ +S PP+++ K TD + E + E+ ID+++E++ NAI G+F
Sbjct: 20 VQLASFPPILQVKRKH-TDTLHEPIEELSAMIDHINESMPNAIITGDF 66
>SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)
Length = 341
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 107 DTLKLCEEFNEEHQKIVGAVKSLEALEMVISEAVKITKWELTEEGELVAIMVATKPYYTE 286
DT KL +EF + H + +K +E +K + T EL+ V +YTE
Sbjct: 2 DTYKLNKEFVDRHPRYTELIKGKLYRHPWYTELIKGKVYRHTWYTELIKGKVYRHTWYTE 61
Query: 287 VYQTVVYRN 313
+ + VYR+
Sbjct: 62 LIKGKVYRH 70
>SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -2
Query: 204 ASEITISRASKLFTAPTIF*CSSLNSSHNFKVSALSLFSRYFKILSFNSILSSSP 40
+S+ITI+RAS LF+ ++ SSL HN + +S S F I +S P
Sbjct: 182 SSDITITRASNLFSTSSVPQNSSL--GHNTSLVTISRASNTFSISGIPQSSASGP 234
>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
Length = 1318
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +2
Query: 32 KYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEALEMVISEAVK 211
+Y+ + KMELNE I+ Y + K CE +E ++I+ + + ++ A++
Sbjct: 157 RYTFNKQKMELNESIVTYA--ARMRYQAKKCEFGTQEDERILEHLNQTISDGDLVKRAIE 214
Query: 212 ITKWELTE 235
+W LTE
Sbjct: 215 -KRWNLTE 221
>SB_18820| Best HMM Match : FCH (HMM E-Value=5.4e-20)
Length = 477
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 379 IYIDKSSGPPLVKRKVDSITDIVQENLSEIRKGIDNLSENVRNAIKKGNFYKR 537
+ I+ SS P + + K +TD V++ +++K D ++ + N K Y+R
Sbjct: 174 LQIEASSDPNVPQEKFKKLTDAVEKARRDMQKCEDKYNDRLENISKDNPRYER 226
>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 98 DKADTLKLCEEFNEEHQKIVGAVKSLEALEMVISEAVKI 214
DK+D K FNE ++K++G K EA + I E V++
Sbjct: 203 DKSDYPKSSTYFNETNKKVIGKFKD-EAAGIAICEFVRL 240
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 23 KKLKYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEALEM 190
K+ KY + K + R L +NSD +D+ EE +E ++K+ K + A+ +
Sbjct: 312 KQQKYEVAKKKYKKALRYLDEFQNSDSSDSDDEKEEEDETNKKVEDNAKKMAAIAL 367
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,890,883
Number of Sequences: 59808
Number of extensions: 366374
Number of successful extensions: 1193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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