Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060832.seq
         (688 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    25   3.0  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   3.0  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   9.0  
AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydroge...    23   9.0  

>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
           +F +T++++ + D  + +L + +W  LE+  YN
Sbjct: 52  KFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYN 84


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 86  LENSDKADTLKLCEEFNEEHQKIVGAVKSLEALEMVISEAVKITKWELT 232
           L+ +++ D L   EE  E+H +   A + ++ LE   +EAV+  K E T
Sbjct: 256 LKINERVDALN--EERTEKHNRCKLAEREMKDLEKPKTEAVEYLKQENT 302


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +1

Query: 256 NGSHEAVLYRSIPDSGVPQSEAMKMVPNAKVGFSKAMSSGWIYIDKSSGPPLVKRKVDSI 435
           N S  A     +  + VP  E  KM+P  K+G      +G+ +I  ++G  L    +  +
Sbjct: 501 NHSTRAANLLGVVGTDVPIEEIQKMIPQHKLGV-----NGYAFIVDNNGRVLYHPDLRPL 555

Query: 436 TD 441
           +D
Sbjct: 556 SD 557


>AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydrogenase
            protein.
          Length = 1325

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 86   LENSDKADTLKLCEEFNEEHQ 148
            L+++D A   +  E+FNEEH+
Sbjct: 963  LQSADFAKRREAVEKFNEEHR 983


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,563
Number of Sequences: 2352
Number of extensions: 12319
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)