Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060832.seq
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl ... 67 1e-11
AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 67 1e-11
Z70284-7|CAA94284.2| 284|Caenorhabditis elegans Hypothetical pr... 33 0.19
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 33 0.25
AC024811-1|AAF60776.1| 494|Caenorhabditis elegans Dnaj domain (... 31 1.0
AF068713-10|AAC17801.1| 376|Caenorhabditis elegans Serpentine r... 29 3.1
AF024499-5|AAB70355.1| 359|Caenorhabditis elegans Hypothetical ... 29 3.1
AF003138-5|AAL77178.1| 488|Caenorhabditis elegans Hypothetical ... 29 4.1
AF003138-4|ABD94108.1| 400|Caenorhabditis elegans Hypothetical ... 29 4.1
AF003138-3|AAM15568.1| 504|Caenorhabditis elegans Hypothetical ... 29 4.1
AF003138-2|AAM15567.1| 546|Caenorhabditis elegans Hypothetical ... 29 4.1
Z92817-6|CAB60324.1| 384|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z83111-7|CAB05534.2| 384|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuo... 27 9.5
AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuo... 27 9.5
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 27 9.5
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 27 9.5
AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical ... 27 9.5
>AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform b protein.
Length = 496
Score = 67.3 bits (157), Expect = 1e-11
Identities = 28/53 (52%), Positives = 39/53 (73%)
Frame = +3
Query: 525 LLQEVTIKSFLLSKGPQFAITIKKLETDLTSDMLLSGSWKTLEFKPYNFDALG 683
L+ EV IK+ ++SKG F ++ K E DLT +M+ SGSWK ++FK YNFD+LG
Sbjct: 164 LISEVNIKALVVSKGTSFTTSLAKQEADLTPEMIASGSWKDMQFKKYNFDSLG 216
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/98 (29%), Positives = 49/98 (50%)
Frame = +1
Query: 259 GSHEAVLYRSIPDSGVPQSEAMKMVPNAKVGFSKAMSSGWIYIDKSSGPPLVKRKVDSIT 438
GS E +++ + G Q++ K P K+G +KAM W+ +DK V R+ +T
Sbjct: 80 GSPEYLVFEFVGTDGAAQADIQKK-PFGKIGMAKAMQFKWVSVDKGR----VVRQATEVT 134
Query: 439 DIVQENLSEIRKGIDNLSENVRNAIKKGNFYKR*PLKA 552
D ++ L +R G ++SEN + +KK +KA
Sbjct: 135 DSTRKQLESLRIGSSDVSENEKKELKKRKLISEVNIKA 172
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/61 (39%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +2
Query: 62 LNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEALEMVI-SEAVKITKWELTEE 238
L ++IL +L+ S++ ++++L +++N +HQK++GA+KSL A E V+ ++ V + ELT E
Sbjct: 13 LPQQILDFLQESNEFNSIQLAQQWNLDHQKVIGAIKSLLANEGVLTTKDVTEKRLELTNE 72
Query: 239 G 241
G
Sbjct: 73 G 73
>AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform a protein.
Length = 552
Score = 67.3 bits (157), Expect = 1e-11
Identities = 28/53 (52%), Positives = 39/53 (73%)
Frame = +3
Query: 525 LLQEVTIKSFLLSKGPQFAITIKKLETDLTSDMLLSGSWKTLEFKPYNFDALG 683
L+ EV IK+ ++SKG F ++ K E DLT +M+ SGSWK ++FK YNFD+LG
Sbjct: 220 LISEVNIKALVVSKGTSFTTSLAKQEADLTPEMIASGSWKDMQFKKYNFDSLG 272
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/98 (29%), Positives = 49/98 (50%)
Frame = +1
Query: 259 GSHEAVLYRSIPDSGVPQSEAMKMVPNAKVGFSKAMSSGWIYIDKSSGPPLVKRKVDSIT 438
GS E +++ + G Q++ K P K+G +KAM W+ +DK V R+ +T
Sbjct: 136 GSPEYLVFEFVGTDGAAQADIQKK-PFGKIGMAKAMQFKWVSVDKGR----VVRQATEVT 190
Query: 439 DIVQENLSEIRKGIDNLSENVRNAIKKGNFYKR*PLKA 552
D ++ L +R G ++SEN + +KK +KA
Sbjct: 191 DSTRKQLESLRIGSSDVSENEKKELKKRKLISEVNIKA 228
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/61 (39%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +2
Query: 62 LNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEALEMVI-SEAVKITKWELTEE 238
L ++IL +L+ S++ ++++L +++N +HQK++GA+KSL A E V+ ++ V + ELT E
Sbjct: 69 LPQQILDFLQESNEFNSIQLAQQWNLDHQKVIGAIKSLLANEGVLTTKDVTEKRLELTNE 128
Query: 239 G 241
G
Sbjct: 129 G 129
>Z70284-7|CAA94284.2| 284|Caenorhabditis elegans Hypothetical
protein K07F5.8 protein.
Length = 284
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 80 KYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEALEMVISEAVKITKWELTEEG 241
+YL D DT+ F E+ QK+ +S +A++ + A K+TK LT EG
Sbjct: 102 EYLPTEDNKDTMS----FKEKGQKVTVKFESSKAIKFRDNSAAKVTKTVLTVEG 151
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 32.7 bits (71), Expect = 0.25
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Frame = +2
Query: 44 EELKMELNERILKYLENSDKADTL--KLCEEFNE-------EHQKIVGAVKSLEALEMVI 196
EELK ++ I+K E + D L KL ++ +E EH+K + +K A E I
Sbjct: 249 EELKKSVSSEIVKATEAAHATDQLRKKLQKQQDEHEKRVEQEHKKEIEDLKGALAAEKRI 308
Query: 197 SEAVKITKWELTEE 238
SEA K+ +LTEE
Sbjct: 309 SEADKVELKKLTEE 322
>AC024811-1|AAF60776.1| 494|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 28 protein.
Length = 494
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 26 KLKYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEAL 184
KL EL E++E K + D +++ C + N +H+K + KSL+ +
Sbjct: 203 KLSSDNTELLFEMSELEYKVADVRDSLGSIRECLKLNPDHKKCYTSYKSLKKI 255
>AF068713-10|AAC17801.1| 376|Caenorhabditis elegans Serpentine
receptor, class w protein130 protein.
Length = 376
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -2
Query: 222 HFVILTASEITISRASKLFTAPTIF*CSSLNSSHNFKVSALSLFSRYFKILSFNS 58
HF+ILT I S + + TA I L+ +NFK S L +K + NS
Sbjct: 57 HFIILTRKPIRTSSVNIIMTAIAI--VEILSLFYNFKTSILYWLRTNYKCFNSNS 109
>AF024499-5|AAB70355.1| 359|Caenorhabditis elegans Hypothetical
protein F42G2.3 protein.
Length = 359
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 241 RTRCYNGSHEAVLYRSIPDSGVPQSEAMKMVPNAKVGFSKAMSSGWIYIDKSSGPPLVK 417
R + N + + +S+P SGV S+ + PN + F + +Y + SG L+K
Sbjct: 204 REKLLNATQHLLDIKSLPLSGVIISDPLMNAPNLDIDFIQTAEMLLLYCEVISGEGLLK 262
>AF003138-5|AAL77178.1| 488|Caenorhabditis elegans Hypothetical
protein F12B6.2b protein.
Length = 488
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 619 SLVKSVSNFFIVIANWGPFDSKKLLMVT 536
++ S FIVIA +GPFDS +L+ ++
Sbjct: 301 AIASFASAIFIVIAAYGPFDSAELVQLS 328
>AF003138-4|ABD94108.1| 400|Caenorhabditis elegans Hypothetical
protein F12B6.2d protein.
Length = 400
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 619 SLVKSVSNFFIVIANWGPFDSKKLLMVT 536
++ S FIVIA +GPFDS +L+ ++
Sbjct: 343 AIASFASAIFIVIAAYGPFDSAELVQLS 370
>AF003138-3|AAM15568.1| 504|Caenorhabditis elegans Hypothetical
protein F12B6.2c protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 619 SLVKSVSNFFIVIANWGPFDSKKLLMVT 536
++ S FIVIA +GPFDS +L+ ++
Sbjct: 301 AIASFASAIFIVIAAYGPFDSAELVQLS 328
>AF003138-2|AAM15567.1| 546|Caenorhabditis elegans Hypothetical
protein F12B6.2a protein.
Length = 546
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 619 SLVKSVSNFFIVIANWGPFDSKKLLMVT 536
++ S FIVIA +GPFDS +L+ ++
Sbjct: 343 AIASFASAIFIVIAAYGPFDSAELVQLS 370
>Z92817-6|CAB60324.1| 384|Caenorhabditis elegans Hypothetical
protein F57G8.6 protein.
Length = 384
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Frame = +2
Query: 23 KKLKYSGEELKMELNERILKYLENSDKADTLKLCEEFNE-------EHQ-KIVGAVKSLE 178
++L+ S E L + Y + D LK+CE+F E EH K +G +
Sbjct: 277 QELEVSDVEFNFMLAQLTFSYAGKRLQGDILKICEKFQEVLSNDLHEHYVKELGMQRYSG 336
Query: 179 ALE--MVISEAVKITKWELTEEGELVAI 256
L M I+ A++ W GEL A+
Sbjct: 337 RLSKIMKINNAIQNDIWSNRPRGELAAV 364
>Z83111-7|CAB05534.2| 384|Caenorhabditis elegans Hypothetical
protein F57G8.6 protein.
Length = 384
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Frame = +2
Query: 23 KKLKYSGEELKMELNERILKYLENSDKADTLKLCEEFNE-------EHQ-KIVGAVKSLE 178
++L+ S E L + Y + D LK+CE+F E EH K +G +
Sbjct: 277 QELEVSDVEFNFMLAQLTFSYAGKRLQGDILKICEKFQEVLSNDLHEHYVKELGMQRYSG 336
Query: 179 ALE--MVISEAVKITKWELTEEGELVAI 256
L M I+ A++ W GEL A+
Sbjct: 337 RLSKIMKINNAIQNDIWSNRPRGELAAV 364
>Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical
protein ZK637.8d protein.
Length = 899
Score = 27.5 bits (58), Expect = 9.5
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +2
Query: 32 KYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEA-LEMVISEAV 208
KY E + + ER L+YLE K D + + + + + LEA E + +E
Sbjct: 62 KYVNEVRRCDEMERKLRYLEREIKKDQIPMLDTGENPDAPLPREMIDLEATFEKLENELR 121
Query: 209 KITKWELT------EEGELVAIMVATKPYYTEV 289
++ K E T E EL I+ T+ ++ EV
Sbjct: 122 EVNKNEETLKKNFSELTELKHILRKTQTFFEEV 154
>Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical
protein ZK637.8a protein.
Length = 905
Score = 27.5 bits (58), Expect = 9.5
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +2
Query: 32 KYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEA-LEMVISEAV 208
KY E + + ER L+YLE K D + + + + + LEA E + +E
Sbjct: 62 KYVNEVRRCDEMERKLRYLEREIKKDQIPMLDTGENPDAPLPREMIDLEATFEKLENELR 121
Query: 209 KITKWELT------EEGELVAIMVATKPYYTEV 289
++ K E T E EL I+ T+ ++ EV
Sbjct: 122 EVNKNEETLKKNFSELTELKHILRKTQTFFEEV 154
>AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuolar
proton pump 103kDa subunit variant protein.
Length = 899
Score = 27.5 bits (58), Expect = 9.5
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +2
Query: 32 KYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEA-LEMVISEAV 208
KY E + + ER L+YLE K D + + + + + LEA E + +E
Sbjct: 62 KYVNEVRRCDEMERKLRYLEREIKKDQIPMLDTGENPDAPLPREMIDLEATFEKLENELR 121
Query: 209 KITKWELT------EEGELVAIMVATKPYYTEV 289
++ K E T E EL I+ T+ ++ EV
Sbjct: 122 EVNKNEETLKKNFSELTELKHILRKTQTFFEEV 154
>AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuolar
proton pump 103kDa subunit variant protein.
Length = 905
Score = 27.5 bits (58), Expect = 9.5
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +2
Query: 32 KYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEA-LEMVISEAV 208
KY E + + ER L+YLE K D + + + + + LEA E + +E
Sbjct: 62 KYVNEVRRCDEMERKLRYLEREIKKDQIPMLDTGENPDAPLPREMIDLEATFEKLENELR 121
Query: 209 KITKWELT------EEGELVAIMVATKPYYTEV 289
++ K E T E EL I+ T+ ++ EV
Sbjct: 122 EVNKNEETLKKNFSELTELKHILRKTQTFFEEV 154
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +2
Query: 32 KYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSL-EALEMVISEAV 208
K + ++ +++ K+L+N K + L +E +E GA+ + + V++
Sbjct: 164 KNISDRRELIFGDKLHKFLKNQGKKSLVDLMKEAIDE-SGTDGALGDVWNDVTSVLNRKT 222
Query: 209 KITKWELTEEGELVAIMVA-TKPYYTEVYQTVVYRNLKL 322
++ +LT LV + +TE QTVV RNL++
Sbjct: 223 SASRDDLTTTANLVEDACKYLQAVFTEHMQTVVERNLEV 261
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +2
Query: 32 KYSGEELKMELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSL-EALEMVISEAV 208
K + ++ +++ K+L+N K + L +E +E GA+ + + V++
Sbjct: 164 KNISDRRELIFGDKLHKFLKNQGKKSLVDLMKEAIDE-SGTDGALGDVWNDVTSVLNRKT 222
Query: 209 KITKWELTEEGELVAIMVA-TKPYYTEVYQTVVYRNLKL 322
++ +LT LV + +TE QTVV RNL++
Sbjct: 223 SASRDDLTTTANLVEDACKYLQAVFTEHMQTVVERNLEV 261
>AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical
protein C09E7.9 protein.
Length = 789
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 113 LKLCEEFNEEHQKIVGAVKSLEALEMVISEAVKITKWELTEEGELVAIMVATKPYYTEVY 292
LK E N+EH+K + + L+ I I+K +L E E+ + T +
Sbjct: 424 LKNVEHLNKEHKKAIDLANEISKLKTEIERETSISK-QL--EKEISQLRTETDEMNIVIT 480
Query: 293 QTVVYRNLKL 322
Q++ NL+L
Sbjct: 481 QSLEMENLQL 490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,381,831
Number of Sequences: 27780
Number of extensions: 291697
Number of successful extensions: 887
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -