Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060832.seq
(688 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 24 1.2
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 24 1.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.2
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 24 1.2
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 22 4.8
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 8.3
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 8.3
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 8.3
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 8.3
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
+F IT++++ + D + +L + +W LE+ YN
Sbjct: 15 KFGITLQQIIDVDEKNQILTTNAWLKLEWVDYN 47
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
+F IT++++ + D + +L + +W LE+ YN
Sbjct: 15 KFGITLQQIIDVDEKNQILTTNAWLKLEWVDYN 47
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
+F IT++++ + D + +L + +W LE+ YN
Sbjct: 15 KFGITLQQIIDVDEKNQILTTNAWLKLEWVDYN 47
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
+F IT++++ + D + +L + +W LE+ YN
Sbjct: 15 KFGITLQQIIDVDEKNQILTTNAWLKLEWVDYN 47
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
+F IT++++ + D + +L + +W LE+ YN
Sbjct: 15 KFGITLQQIIDVDEKNQILTTNAWLKLEWVDYN 47
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
+F IT++++ + D + +L + +W LE+ YN
Sbjct: 15 KFGITLQQIIDVDEKNQILTTNAWLKLEWVDYN 47
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.2 bits (50), Expect = 1.2
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -1
Query: 220 FCNLNSFRNNHFKSFQTFYSTNY 152
+ N N++ NN+ ++ Y+ NY
Sbjct: 91 YSNYNNYNNNYNNNYNNNYNNNY 113
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.2 bits (50), Expect = 1.2
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -1
Query: 220 FCNLNSFRNNHFKSFQTFYSTNY 152
+ N N++ NN+ ++ Y+ NY
Sbjct: 91 YSNYNNYNNNYNNNYNNNYNNNY 113
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
+F IT++++ + D + +L + +W LE+ YN
Sbjct: 83 KFGITLQQIIDVDEKNQILTTNAWLKLEWVDYN 115
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
+F IT++++ + D + +L + +W LE+ YN
Sbjct: 83 KFGITLQQIIDVDEKNQILTTNAWLKLEWVDYN 115
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 164 VKSLEALEMVISEAVKITKWELTEEGELVAIMVATKPY 277
++SLE L + + V W++T LV + + + P+
Sbjct: 889 LRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSNPW 926
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +2
Query: 110 TLKLCEEFNEEHQKIVGAVKSLEALEMVISEAV 208
T++ C+E + Q I+G L+ ++ I +++
Sbjct: 250 TIRKCDESSPHDQVIIGGSNGLDTSKVHIIDSI 282
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.3
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -1
Query: 196 NNHFKSFQTFYSTNY 152
NN++ ++ Y+TNY
Sbjct: 95 NNNYNNYNNNYNTNY 109
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 167 KSLEALEMVISEAVKITKWELTEEGELVAIMVATKPYYT 283
K L+ +E KI +W EG+L T+ Y+
Sbjct: 370 KYLDVIERNSGATDKIIRWCTWSEGDLEKCKALTRAAYS 408
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 167 KSLEALEMVISEAVKITKWELTEEGELVAIMVATKPYYT 283
K L+ +E KI +W EG+L T+ Y+
Sbjct: 370 KYLDVIERNSGATDKIIRWCTWSEGDLEKCKALTRAAYS 408
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 167 KSLEALEMVISEAVKITKWELTEEGELVAIMVATKPYYT 283
K L+ +E KI +W EG+L T+ Y+
Sbjct: 370 KYLDVIERNSGATDKIIRWCTWSEGDLEKCKALTRAAYS 408
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,276
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 24
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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