Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060830.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 30 2.0
04_03_0446 - 16012926-16013042,16013266-16013469 30 2.0
04_04_1324 + 32659752-32661972,32662067-32662761 29 2.6
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 29 4.6
04_04_0357 - 24663305-24663711,24664179-24664461 28 6.0
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 28 8.0
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258... 28 8.0
04_04_0360 - 24684159-24684565,24684654-24685089 28 8.0
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765... 28 8.0
04_03_0719 + 19006730-19007440 28 8.0
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100... 28 8.0
01_06_0247 + 27851206-27851255,27851382-27851496,27852280-278524... 28 8.0
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 364 KFVGHVVHKLFGDGRRPMFRCGPTFHLQETLSGHAMMCTG 245
K+ HV+ LF D CG F L+E LS H C G
Sbjct: 879 KYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVHT-ACHG 917
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 279 SWRWNVGPQRNIGRLPSPKSLW 344
SWRW GR PSP+ +W
Sbjct: 46 SWRWRQAEGSPAGRSPSPRQIW 67
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 248 GTHHRVATQSFLEM-ERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGESP 406
G HR + S E P+ EHR SV+ A TDS SD+DT G P
Sbjct: 413 GGEHRRLSMSLNEAGTEQPSGEHRQLSVSSS----DAGSSTDSTSDSDTPGGDP 462
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 366 PTVSQTPILQESRPSIGPSRGSNSRSLALRHRNHRCLKLTTRHRCWPP 509
PT + TP E RP G R L L H C + T +RCW P
Sbjct: 51 PTTAFTP--PEPRPIPRWLHGRCFRCLGLGHLKASCSQPPTCYRCWYP 96
>04_04_0357 - 24663305-24663711,24664179-24664461
Length = 229
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 198 DFEHLDRETKQDPAD-SPVHIIAWPLRVSWRWNVGPQ-RNIG 317
+ ++ D+ KQ P + PL++SW +N GP +NIG
Sbjct: 106 NMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIG 147
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 327 SPKSLWTTWPTNLPTVSQTPILQESRPSIGPS 422
SP T+W TN ++S +PIL P PS
Sbjct: 97 SPTPTTTSWTTNSSSISASPILPPPPPPPMPS 128
>06_02_0092 -
11624905-11625123,11625206-11625292,11625767-11625889,
11625992-11626351,11626427-11626511,11626603-11626661,
11627173-11627265,11627360-11627464,11627539-11627636,
11627811-11627916,11628009-11628131,11628986-11629021,
11629113-11629310,11629415-11629612,11629917-11630056,
11630181-11630322,11630416-11630556
Length = 770
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 284 EMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGES 403
E G ++R +V E LMD++ DS+ DA AG S
Sbjct: 238 EKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLS 277
>04_04_0360 - 24684159-24684565,24684654-24685089
Length = 280
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 204 EHLDRETKQDPAD-SPVHIIAWPLRVSWRWNVGPQ-RNIG 317
++ D+ KQ P + PL++SW +N GP +NIG
Sbjct: 159 DYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIG 198
>04_03_0946 +
20975955-20976095,20976189-20976330,20976449-20976588,
20976893-20977090,20977195-20977392,20977484-20977519,
20978374-20978496,20978589-20978694,20978869-20978966,
20979041-20979145,20979240-20979332,20979842-20979900,
20979984-20980068,20980144-20980503,20980606-20980728,
20981203-20981289,20981372-20981590
Length = 770
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 284 EMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGES 403
E G ++R +V E LMD++ DS+ DA AG S
Sbjct: 238 EKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLS 277
>04_03_0719 + 19006730-19007440
Length = 236
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 417 GRWRGDSPAVSASDSLSVNLSAMWSISFSATEGGRCSAA 301
GR+ GD +AS SV+ AM +++ +A+ CS+A
Sbjct: 126 GRYDGDDHHDAASSVSSVDAGAMAAMAAAASSNSSCSSA 164
>03_04_0201 -
18409088-18409306,18409389-18409475,18409950-18410072,
18410175-18410534,18410610-18410694,18410780-18410838,
18411350-18411442,18411537-18411641,18411716-18411813,
18411988-18412093,18412186-18412308,18413163-18413198,
18413290-18413487,18413592-18413789,18414094-18414233,
18414356-18414497,18414591-18414731
Length = 770
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 284 EMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGES 403
E G ++R +V E LMD++ DS+ DA AG S
Sbjct: 238 EKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLS 277
>01_06_0247 +
27851206-27851255,27851382-27851496,27852280-27852468,
27853698-27854057,27854138-27854201,27854365-27854504,
27854610-27854918,27855135-27855389
Length = 493
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 195 DDFEHLDRETKQDPADS----PVHIIAWPLRVSWRWNVGPQRNIGRLPSPKSL 341
DDF H+ R+T++ D+ +A P ++ + NV P +G P SL
Sbjct: 100 DDFYHVSRDTREVSCDTCQSGSTKDVAGPSSIALK-NVDPSDGVGAFPKAMSL 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,451,784
Number of Sequences: 37544
Number of extensions: 376775
Number of successful extensions: 1225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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