Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060830.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46703| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                31   0.87 
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_46703| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 564

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 245 TGTHHRVATQSFLEMERGPAAEHRP-PSVAEKLMDHMADKFTDSESDADTAGESPLHRPE 421
           T  +HR + QS   +  G    HRP P V   + D +  +++D +S   T G    HRP+
Sbjct: 424 TDLNHRYSDQS-QTLTTGIPISHRPQPQVFRSVTD-LNHRYSD-QSQTSTTGIPISHRPQ 480

Query: 422 PRV 430
           P+V
Sbjct: 481 PQV 483



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 245 TGTHHRVATQSFLEMERGPAAEHRP-PSVAEKLMDHMADKFTDSESDADTAGESPLHRPE 421
           T  +HR + QS       P + HRP P V + + D +  +++D +S   T G    HRP+
Sbjct: 360 TDLNHRYSDQSQTSTTGIPIS-HRPQPQVFQSVTD-LNHRYSD-QSQTSTTGIPISHRPQ 416

Query: 422 PRV 430
           P+V
Sbjct: 417 PQV 419



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 245 TGTHHRVATQSFLEMERGPAAEHRP-PSVAEKLMDHMADKFTDSESDADTAGESPLHRPE 421
           T  +HR + QS       P + HRP P V   + D +  +++D +S   T G    HRP+
Sbjct: 328 TDLNHRYSDQSQTSTIGIPIS-HRPQPQVFRSVTD-LNHRYSD-QSQTSTTGIPISHRPQ 384

Query: 422 PRV 430
           P+V
Sbjct: 385 PQV 387



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 245 TGTHHRVATQSFLEMERGPAAEHRP-PSVAEKLMDHMADKFTDSESDADTAGESPLHRPE 421
           T  +HR + QS       P + HRP P V + + D +  ++++ +S   T G    HRP+
Sbjct: 264 TDLNHRYSDQSQTSTTGIPIS-HRPQPQVFQSVKD-LNHRYSN-QSHTSTTGIPISHRPQ 320

Query: 422 PRV 430
           P+V
Sbjct: 321 PQV 323


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 462 NHRCLKLTTRHRCWPPARSACPRETCG 542
           +H+C K   +H C    R  CPR+ CG
Sbjct: 160 HHKCQKFVNKHGCNGSVRDKCPRK-CG 185


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 302 AAEHRPPSVAEKLMDH--MADKFTDSESDADTAGESPLHRPEPRVEL 436
           A EHRP     K      MA K T +++      ESPLH P PR  L
Sbjct: 641 AKEHRPVDRPTKGQRDKTMAVKSTKTQTSPQEYRESPLHTPLPRKRL 687


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 357 TNLPTVSQTPILQESRPSIGPSRGSNSRSLALRHRNHRCLKLTTRHRCWPPARSACPRET 536
           T  P V+ +       P++GP +G +S  L L+H+    L    R +  P + S+     
Sbjct: 560 TQSPVVTPSTATMTPTPNMGPPKGYDSYFLRLQHQEEEYL-AGEREKAKPSSESS---HG 615

Query: 537 CGAQSGAG 560
             AQS AG
Sbjct: 616 STAQSAAG 623


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,031
Number of Sequences: 59808
Number of extensions: 381593
Number of successful extensions: 1196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)