Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060830.seq
         (686 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          25   2.2  
AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan transpo...    25   2.2  
AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan transpo...    25   2.2  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    25   2.2  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   5.2  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    24   5.2  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   6.8  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   9.0  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   9.0  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   9.0  

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 399 SRPSIGPSRGSNSRSLALRHRNHRCLKLTTRHRCWPPARSACPRET 536
           +R +I P+R + + +     R  R +    R RC P AR   P  T
Sbjct: 473 TRRTIPPTRVAAAAAAPEGRRRRRAIARARRRRCRPRARRNPPATT 518


>AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 414 RWRGDSPAVSASDSLSVNLSAMWSISFSATEGG 316
           +W  D   + +  +LSV L  +W   F+A E G
Sbjct: 77  KWGKDIEFLLSCIALSVGLGNVWRFPFTALENG 109


>AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 414 RWRGDSPAVSASDSLSVNLSAMWSISFSATEGG 316
           +W  D   + +  +LSV L  +W   F+A E G
Sbjct: 77  KWGKDIEFLLSCIALSVGLGNVWRFPFTALENG 109


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-signaling
            promoter protein.
          Length = 1197

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 393  AVSASDSLSVNLSAMWSISFSATEGGRCSAAG 298
            AV    SLS+++++M S +   + GGR S+ G
Sbjct: 988  AVVRPQSLSLSMNSMGSDNSEQSSGGRLSSGG 1019


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 295 TFHLQETLSGHAMM 254
           TFHL + LSGH  +
Sbjct: 928 TFHLSQVLSGHGFL 941


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +1

Query: 244 HRYTSSRGHSEFLGDGTW-ARSGTSAAFRRRKAYGPHG 354
           HR TSS  H   +G   W   S     F+   A+G  G
Sbjct: 204 HRLTSSSAHGSRVGGRGWKTESFNEDFFKELLAFGDFG 241


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 198  HPSSPGRASW 169
            H SSPGR SW
Sbjct: 1216 HKSSPGRGSW 1225


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 230 RPGGFTGTHHRVATQSF 280
           RPGG  G H   AT  F
Sbjct: 421 RPGGCNGLHSTTATNRF 437


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 345 TTWPTNLPTVSQ 380
           T WPT+ PT SQ
Sbjct: 384 TDWPTHQPTTSQ 395


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 295  TFHLQETLSGH 263
            TFHL + LSGH
Sbjct: 988  TFHLSQVLSGH 998


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,572
Number of Sequences: 2352
Number of extensions: 11858
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)