Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060830.seq
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145629-1|AAD38604.1|  985|Drosophila melanogaster BcDNA.GH0558...    30   3.4  
AE013599-714|AAM68837.1|  985|Drosophila melanogaster CG8740-PC,...    30   3.4  
AE013599-713|AAM68836.1|  985|Drosophila melanogaster CG8740-PB,...    30   3.4  
AE013599-712|AAF59045.1|  985|Drosophila melanogaster CG8740-PA,...    30   3.4  
BT011454-1|AAR99112.1|  558|Drosophila melanogaster RE36948p pro...    29   7.9  
AF184229-1|AAD55740.1|  919|Drosophila melanogaster BcDNA.LD2797...    29   7.9  
AE014297-2297|AAF55382.1|  968|Drosophila melanogaster CG5208-PA...    29   7.9  

>AF145629-1|AAD38604.1|  985|Drosophila melanogaster BcDNA.GH05582
           protein.
          Length = 985

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +3

Query: 186 DSTDDFEHLDRETKQDPADSPVHIIAWPLRVSWRWNVGPQRNIGRLPSPKSLW---TTWP 356
           + T  F  LDR  K  P +  V +       S       +RN    P+    +   T   
Sbjct: 602 EKTSWFRSLDRRAKSSPKELNVSVNGHSETTSSLKRT--KRNTTAAPAKNLRFFGDTDLD 659

Query: 357 TNLPTVSQTPILQESRPSIGPSRGSNS 437
           +N PT+S+   +  SRP +G S+ S S
Sbjct: 660 SNPPTISKASSMPRSRPPLGQSKHSQS 686


>AE013599-714|AAM68837.1|  985|Drosophila melanogaster CG8740-PC,
           isoform C protein.
          Length = 985

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +3

Query: 186 DSTDDFEHLDRETKQDPADSPVHIIAWPLRVSWRWNVGPQRNIGRLPSPKSLW---TTWP 356
           + T  F  LDR  K  P +  V +       S       +RN    P+    +   T   
Sbjct: 602 EKTSWFRSLDRRAKSSPKELNVSVNGHSETTSSLKRT--KRNTTAAPAKNLRFFGDTDLD 659

Query: 357 TNLPTVSQTPILQESRPSIGPSRGSNS 437
           +N PT+S+   +  SRP +G S+ S S
Sbjct: 660 SNPPTISKASSMPRSRPPLGQSKHSQS 686


>AE013599-713|AAM68836.1|  985|Drosophila melanogaster CG8740-PB,
           isoform B protein.
          Length = 985

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +3

Query: 186 DSTDDFEHLDRETKQDPADSPVHIIAWPLRVSWRWNVGPQRNIGRLPSPKSLW---TTWP 356
           + T  F  LDR  K  P +  V +       S       +RN    P+    +   T   
Sbjct: 602 EKTSWFRSLDRRAKSSPKELNVSVNGHSETTSSLKRT--KRNTTAAPAKNLRFFGDTDLD 659

Query: 357 TNLPTVSQTPILQESRPSIGPSRGSNS 437
           +N PT+S+   +  SRP +G S+ S S
Sbjct: 660 SNPPTISKASSMPRSRPPLGQSKHSQS 686


>AE013599-712|AAF59045.1|  985|Drosophila melanogaster CG8740-PA,
           isoform A protein.
          Length = 985

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +3

Query: 186 DSTDDFEHLDRETKQDPADSPVHIIAWPLRVSWRWNVGPQRNIGRLPSPKSLW---TTWP 356
           + T  F  LDR  K  P +  V +       S       +RN    P+    +   T   
Sbjct: 602 EKTSWFRSLDRRAKSSPKELNVSVNGHSETTSSLKRT--KRNTTAAPAKNLRFFGDTDLD 659

Query: 357 TNLPTVSQTPILQESRPSIGPSRGSNS 437
           +N PT+S+   +  SRP +G S+ S S
Sbjct: 660 SNPPTISKASSMPRSRPPLGQSKHSQS 686


>BT011454-1|AAR99112.1|  558|Drosophila melanogaster RE36948p
           protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 354 PTNLPTVSQTPILQESRPSIGPSRGSNSRSL 446
           P N+P + Q P++Q+  P   P  G N R L
Sbjct: 338 PGNIPQLPQHPLMQQHMPHNFPLPGGNQRPL 368


>AF184229-1|AAD55740.1|  919|Drosophila melanogaster BcDNA.LD27979
           protein.
          Length = 919

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 354 PTNLPTVSQTPILQESRPSIGPSRGSNSRSL 446
           P N+P + Q P++Q+  P   P  G N R L
Sbjct: 289 PGNIPQLPQHPLMQQHMPHNFPLPGGNQRPL 319


>AE014297-2297|AAF55382.1|  968|Drosophila melanogaster CG5208-PA
           protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 354 PTNLPTVSQTPILQESRPSIGPSRGSNSRSL 446
           P N+P + Q P++Q+  P   P  G N R L
Sbjct: 338 PGNIPQLPQHPLMQQHMPHNFPLPGGNQRPL 368


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,032,217
Number of Sequences: 53049
Number of extensions: 551868
Number of successful extensions: 2049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2047
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)