Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060830.seq
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71259-4|CAA95788.2| 501|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z67738-2|CAA91546.2| 482|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL110498-3|CAB54470.1| 846|Caenorhabditis elegans Hypothetical ... 29 2.4
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 5.4
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 5.4
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical... 28 5.4
U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical pr... 27 9.5
U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical pr... 27 9.5
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca... 27 9.5
>Z71259-4|CAA95788.2| 501|Caenorhabditis elegans Hypothetical
protein F13G3.3 protein.
Length = 501
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Frame = +3
Query: 204 EHLDRETKQDPADSPVHIIAWPLRVSWRWNVGPQRNIGRLP-SPKSLWTTWPTNLPTVSQ 380
EH+ R K + +IA P +++ W PQ+N+ +L P+ T ++ +
Sbjct: 309 EHVLRNIKHEQQTETGKMIAIPSKINNTWIHWPQKNLKKLAVKPEFNSITHLKHIELLDG 368
Query: 381 TPILQESRPSIGPSRGSNSRSLALRHRNHRCLKLTTRHRCW 503
E P PS G ++ + ++N + ++ W
Sbjct: 369 LKSKNEEEPKYNPSTGLDNDKPLISNKNIKMIEKDFNRMSW 409
>Z67738-2|CAA91546.2| 482|Caenorhabditis elegans Hypothetical
protein W03G11.3 protein.
Length = 482
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
Frame = +3
Query: 264 WPLRVSWRWN---VGPQRNI 314
WP R SW WN +GP+R+I
Sbjct: 127 WPSRTSWNWNSMDIGPKRDI 146
>AL110498-3|CAB54470.1| 846|Caenorhabditis elegans Hypothetical
protein Y64G10A.6 protein.
Length = 846
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 233 PGGFTGTHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMA 355
P F THHRVAT+ E+E PPS+ K+ D A
Sbjct: 655 PQWFENTHHRVATRRVSELEAHNIVP-LPPSLEVKVEDEDA 694
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 165 QTMKRDQDSTDDFEHLDRETKQDPADSPVH 254
+++K ++S + F E +QD +DSP+H
Sbjct: 3946 ESLKSPKESGEAFSQFTSEKEQDRSDSPIH 3975
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 165 QTMKRDQDSTDDFEHLDRETKQDPADSPVH 254
+++K ++S + F E +QD +DSP+H
Sbjct: 3946 ESLKSPKESGEAFSQFTSEKEQDRSDSPIH 3975
>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
protein C02E7.1 protein.
Length = 1050
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 523 QAERAGGQHRCRVVSFRHRWFRCRSARLREFDPRLGPME 407
+A A G CRV+ F + FR R++ + PME
Sbjct: 577 EAYEAFGDEGCRVIGFAQKKFRARASTVFSLKSNTVPME 615
>U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical
protein F38A5.2a protein.
Length = 452
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 168 TMKRDQDSTDDFEHLDRETKQDP-ADSPVHIIAWPLRVSWRWNVGPQRNIGRLPSPKSLW 344
T D+ DD E LD E +Q P A ++ P V ++ G +R +P+ ++
Sbjct: 69 TSNFDEHVGDDAE-LDYELEQAPEATEDGAVVNNP--VCGGYHFGRKRADDFVPNANTVT 125
Query: 345 TT-WPTNLPTVSQTPILQES 401
WPTNL + P+L +S
Sbjct: 126 VLKWPTNLAIPPRNPVLSDS 145
>U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical
protein F38A5.2b protein.
Length = 450
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 168 TMKRDQDSTDDFEHLDRETKQDP-ADSPVHIIAWPLRVSWRWNVGPQRNIGRLPSPKSLW 344
T D+ DD E LD E +Q P A ++ P V ++ G +R +P+ ++
Sbjct: 67 TSNFDEHVGDDAE-LDYELEQAPEATEDGAVVNNP--VCGGYHFGRKRADDFVPNANTVT 123
Query: 345 TT-WPTNLPTVSQTPILQES 401
WPTNL + P+L +S
Sbjct: 124 VLKWPTNLAIPPRNPVLSDS 143
>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
protein 4 protein.
Length = 2325
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Frame = +3
Query: 177 RDQDSTDDFEHLDRETKQDPADSPVHIIAWPLRVSWRWNVGPQRNIG--------RLPSP 332
R+++++ + +++ + + +H P +V RWN G N R P
Sbjct: 629 REENASAMLQIIEKPAMPERVRAELHNETMPAKVRVRWNEGFDGNEPIIKHAIEMRTMGP 688
Query: 333 KSLWTTWPT---NLPTVSQTPILQESRPSIGPSRGSNSRSLA 449
LW+ W T N+P P + PS + R +A
Sbjct: 689 TGLWSDWTTAIDNIPKEEGKPCCWTDIEDLRPSSTAEFRVVA 730
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,885
Number of Sequences: 27780
Number of extensions: 259236
Number of successful extensions: 829
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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