Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060830.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei...    30   1.7  
At1g74040.1 68414.m08574 2-isopropylmalate synthase 1 (IMS1) ide...    29   2.9  
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ...    29   3.8  
At4g03030.1 68417.m00411 kelch repeat-containing F-box family pr...    28   6.7  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    28   6.7  

>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
           similar to SP|Q40374 Pathogenesis-related protein PR-1
           precursor {Medicago truncatula}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 210

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = +3

Query: 300 PQRNIGRLPSPKSLWTTWPTNLPTVSQTPILQESRPSIGPSRGSNSRSLALRHRNHR 470
           PQR I   P P   +   P  LPT S  PIL +  P+  P  GS  +     H   R
Sbjct: 33  PQRPITPSPPP---YVAKPQPLPTPSPKPILYQPPPTYQPPTGSFEQQFLDPHNTVR 86


>At1g74040.1 68414.m08574 2-isopropylmalate synthase 1 (IMS1)
           identical to 2-isopropylmalate synthase (IMS1)
           [Arabidopsis thaliana] GI:12330687;  identical to cDNA
           2-isopropylmalate synthase (IMS1) GI:12330686
          Length = 631

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 366 PTVSQTPILQESRPSIGPSRGSNSRSLALRHRNHRCLKLTT 488
           P +S       S P++  S  S   SL LR +NHR + LTT
Sbjct: 9   PNLSSPSFGVPSIPALSSSSTSPFSSLHLRSQNHRTISLTT 49


>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 980

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 508 GGQHRCRVVSFRHRWFRCRSARLREFDPRLGPMEGRLS 395
           GG    +  SF+ RW R  SA     DP LG  + R S
Sbjct: 111 GGYEASKASSFQRRWTRNASANNACIDPSLGMSQYRYS 148


>At4g03030.1 68417.m00411 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 442

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 177 RDQDSTDDFEHLDRETKQDPADSPVHIIAWPLRVSWR 287
           RD  +T++  HL     QDP+ SP  +   P+ +SWR
Sbjct: 85  RDNSNTNNLSHLLCIFPQDPSISPPFLFD-PVTLSWR 120


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 219  ETKQDPADSPVHIIAWPLRVSWRWNVGPQRNIGRLPSPKSLWTTWPTNLPTV 374
            +TK    +S VH      +   R +  P+R +  +PSP+  W+  P ++  V
Sbjct: 2663 KTKLGLLESEVHHFRLKGKAKSRRSRNPERKMPSMPSPRRSWSQSPRSMSQV 2714


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,611,552
Number of Sequences: 28952
Number of extensions: 245919
Number of successful extensions: 748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)