Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060828.seq
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 3e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 47 3e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 41 2e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 40 3e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 0.001
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 32 0.090
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 31 0.12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 30 0.36
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.84
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.5
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.5
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.5
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 5.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 96.7 bits (230), Expect = 3e-21
Identities = 43/87 (49%), Positives = 56/87 (64%)
Frame = +1
Query: 256 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYV 435
W + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 436 QQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ VK +G++ PTPIQ Q WP+AM R
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGR 160
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXDGPIAWV 637
KTL+Y LPAIVHIN QP + DGPI V
Sbjct: 172 KTLSYCLPAIVHINAQPLLSPGDGPIVLV 200
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +1
Query: 247 TPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANF 423
T ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 366 TVDHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGL 425
Query: 424 PDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVGLHL 570
+ ++GY++PT IQAQ P R + K GK + L
Sbjct: 426 SAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLL 474
Score = 33.5 bits (73), Expect = 0.030
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXDGPIA 631
KT+A++LP HI +Q P+ +GPIA
Sbjct: 468 KTIAFLLPMFRHIKDQRPLKTGEGPIA 494
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/56 (30%), Positives = 35/56 (62%)
Frame = +1
Query: 349 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ +L+R
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPV-LLQR 286
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXD---GPIAWV 637
KT A+I+P I+ I+ PP+ + GP A V
Sbjct: 299 KTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 40.3 bits (90), Expect = 3e-04
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 340 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAML 510
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP +
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 511 ERI*LAYPKRVPGKNV 558
R + + GK V
Sbjct: 202 GRDVVGIAETGSGKTV 217
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRV 543
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI R +A +
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 544 PGKNVG 561
GK G
Sbjct: 217 SGKTAG 222
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 31.9 bits (69), Expect = 0.090
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVGLHLAS 576
FE+ + G+ G++ P+PIQ + PIA+ R LA K GK + S
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPS 102
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVGLHL 570
F+E D + + + +G+K PTPIQ + P+ + +R + + GK L
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFAL 102
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 340 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 489
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 28.7 bits (61), Expect = 0.84
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F+ N +++ V G+K+ TP+QA P+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPL 34
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -3
Query: 262 NPNWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--T 89
+P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 142 SPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVET 200
Query: 88 RHDYFSDLVEDVYLNYGFFLTQG 20
H+Y+++LV+ ++ F +QG
Sbjct: 201 EHEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 468 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 343
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 328 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 459
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 328 PYEVEEYRNKHEVTVS 375
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/59 (20%), Positives = 30/59 (50%)
Frame = +1
Query: 376 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
G+ + + F + N +Q+ + +++PT +Q++ P+A+ + +A + GK
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGK 64
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 103 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 23
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 561 ANVFARNPFWVRQLNSFQHSYRPALS 484
AN FW++QL SFQ + P+L+
Sbjct: 2456 ANYEEAKAFWIKQLLSFQPTNFPSLT 2481
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 457 PLSLHLVAHNQENL--LLQSIE 398
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,510
Number of Sequences: 5004
Number of extensions: 58920
Number of successful extensions: 175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -