Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060828.seq
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 1e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 53 2e-07
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 49 4e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 1e-05
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 45 7e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 40 0.002
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 31 0.89
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.5
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 30 1.5
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 30 1.5
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 30 2.0
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.6
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 72.1 bits (169), Expect = 4e-13
Identities = 34/101 (33%), Positives = 51/101 (50%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 429
P + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
+ ++ + Y +PT IQ Q PIA+ R + K GK
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGK 567
Score = 34.7 bits (76), Expect = 0.072
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXDGPIAWV 637
KT A++ PA+VHI +QP + DGPI +
Sbjct: 567 KTAAFLWPALVHIMDQPELQVGDGPIVLI 595
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +1
Query: 322 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 489
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 521 SWRTQNGFRAKTLA---YILPAIVHINNQPPIXRXDGPIAWV 637
S+ + GF T+ +ILP IVHIN+QP + DGPI V
Sbjct: 96 SYFKREGFTEPTMIQAQFILPGIVHINHQPLLQPGDGPIVLV 137
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 54.8 bits (126), Expect = 6e-08
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +1
Query: 262 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYR-NKHEVTVSGVEVHNPIQYFEEANFPDYVQ 438
+V QPF K+FY P + K +P E +E+R + + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 439 QGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVGLHLASNC 582
+K Y++PTPIQAQ P+ M R +A P + + + + C
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGRDMIAI-VMTPTRELAIQIHREC 164
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +1
Query: 295 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 474
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 475 PIQAQGWPIAMLER 516
PIQ Q P+ + R
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 346 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + R
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 334 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 44.8 bits (101), Expect = 7e-05
Identities = 26/97 (26%), Positives = 44/97 (45%)
Frame = +1
Query: 280 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 459
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 460 YKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVGLHL 570
++ PTPIQ Q M R + + GK + L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL 128
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/77 (35%), Positives = 37/77 (48%)
Frame = +1
Query: 340 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI 519
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI + R
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 520 *LAYPKRVPGKNVGLHL 570
+A + GK L
Sbjct: 751 VMACAQTGSGKTAAFLL 767
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/71 (36%), Positives = 36/71 (50%)
Frame = +1
Query: 340 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI 519
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI + R
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 520 *LAYPKRVPGK 552
+A + GK
Sbjct: 174 VMACAQTGSGK 184
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +1
Query: 370 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPG 549
VSG I F E F + + + GY+ PTP+Q PI M R +A + G
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 550 KNVGLHL 570
K L
Sbjct: 529 KTAAYML 535
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 397 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
I FE+ + + + V GYK+PTP+Q PI +R +A + GK
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGK 925
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 355 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLE 513
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ + +
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLAD 140
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 382 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 495
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 328 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 459
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
FE+ + G+ G+ +P+PIQ + P+A+ R LA K GK
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
FE+ + G+ G+ +P+PIQ + P+A+ R LA K GK
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 278 GWSETESQLGVACS--ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFH 108
GW T + S AL+RI + ++ C +YRR CC L +W H +
Sbjct: 181 GWRVTLRVIAATTSQQALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTN 239
Query: 107 GYYSS 93
Y+SS
Sbjct: 240 TYWSS 244
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 212 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 102
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 340 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 432
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 277 VGVKQNPNWASHVLPSREF 221
VGV+ WAS++LPSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,359,956
Number of Sequences: 59808
Number of extensions: 423490
Number of successful extensions: 1112
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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