Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060828.seq
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       49   5e-08
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 26/64 (40%), Positives = 34/64 (53%)
 Frame = +1

Query: 361 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKR 540
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M  R  +A  + 
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 541 VPGK 552
             GK
Sbjct: 243 GSGK 246


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 691  ICSKLAEFGGANSLVXAKDPSNRTITSXNRRLV 593
            + S ++  GG +SLV    P N+ +   N  +V
Sbjct: 918  LSSCVSNDGGCSSLVDVSTPVNKKVYKQNDYIV 950


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 475 PIQAQGWPIAMLERI*LAYPKRVPGKNVGLHL 570
           PI    +P  M  R  LA+P+R  G  V LH+
Sbjct: 289 PIPTGYYP-TMRFRNGLAFPQRETGATVPLHM 319


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 93  TGIIAVETVVPNLEEATNSA 152
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 475 PIQAQGWPIAMLERI*LAYPKRVPGKNVGLHL 570
           PI    +P  M  R  LA+P+R  G  V LH+
Sbjct: 289 PIPTGYYP-TMRFRNGLAFPQRETGATVPLHM 319


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 319 KRSPYEVEEYRNKHEVTV 372
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,609
Number of Sequences: 438
Number of extensions: 3874
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)