Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060828.seq
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 97 1e-20
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 87 1e-17
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 87 1e-17
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 73 2e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 73 2e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 73 2e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 71 7e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 68 5e-12
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 64 6e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 64 8e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 49 3e-06
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 46 2e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 41 7e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 41 9e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 39 0.004
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 37 0.011
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 37 0.015
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 37 0.015
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 36 0.019
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 34 0.078
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 33 0.18
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 32 0.41
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 31 0.55
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 31 0.55
At2g25460.1 68415.m03049 expressed protein 30 1.3
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 1.3
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 29 2.2
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 29 2.2
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 29 2.2
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 29 2.2
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 29 2.2
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 29 3.9
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 29 3.9
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.1
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.1
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.9
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 27 8.9
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 27 8.9
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 27 8.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 96.7 bits (230), Expect = 1e-20
Identities = 45/100 (45%), Positives = 59/100 (59%)
Frame = +1
Query: 259 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 438
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 439 QGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNV 558
+ VK G+ EPTPIQ+QGWP+AM R + + GK +
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTL 151
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXDGPIAWV 637
KTL+Y+LPAIVH+N QP + DGPI V
Sbjct: 149 KTLSYLLPAIVHVNAQPMLAHGDGPIVLV 177
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 86.6 bits (205), Expect = 1e-17
Identities = 39/103 (37%), Positives = 62/103 (60%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 429
P + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNV 558
+ + + +G+ EPTPIQAQGWP+A+ R + + GK +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 217
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXDGPIAWV 637
KTLAY+LPA+VH++ QP + + DGPI +
Sbjct: 215 KTLAYLLPALVHVSAQPRLGQDDGPIVLI 243
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 86.6 bits (205), Expect = 1e-17
Identities = 39/103 (37%), Positives = 62/103 (60%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 429
P + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNV 558
+ + + +G+ EPTPIQAQGWP+A+ R + + GK +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 217
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXDGPIAWV 637
KTLAY+LPA+VH++ QP + + DGPI +
Sbjct: 215 KTLAYLLPALVHVSAQPRLGQDDGPIVLI 243
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/87 (42%), Positives = 48/87 (55%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLERI*LAYPKRVPGKNVG 561
QAQ WPIAM R +A K GK +G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG 211
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/87 (42%), Positives = 48/87 (55%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLERI*LAYPKRVPGKNVG 561
QAQ WPIAM R +A K GK +G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG 211
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/87 (42%), Positives = 48/87 (55%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLERI*LAYPKRVPGKNVG 561
QAQ WPIAM R +A K GK +G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG 211
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 70.9 bits (166), Expect = 7e-13
Identities = 32/103 (31%), Positives = 52/103 (50%)
Frame = +1
Query: 262 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 441
S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 442 GVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVGLHL 570
+K Y++PT IQ Q PI + R + K GK L
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVL 284
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXDGPI 628
KT A++LP IVHI +QP + R +GPI
Sbjct: 278 KTAAFVLPMIVHIMDQPELQRDEGPI 303
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 68.1 bits (159), Expect = 5e-12
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Frame = +1
Query: 283 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 450
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 451 TMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVG 561
+ G+ PTPIQAQ WPIA+ R +A K GK +G
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLG 488
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 64.5 bits (150), Expect = 6e-11
Identities = 33/102 (32%), Positives = 51/102 (50%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 445 VKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVGLHL 570
+K + Y++P PIQAQ PI M R + K GK +G L
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVL 452
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXDGPIAWV 637
KTL ++LP + HI +QPP+ DGPI V
Sbjct: 446 KTLGFVLPMLRHIKDQPPVEAGDGPIGLV 474
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/102 (31%), Positives = 51/102 (50%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 445 VKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVGLHL 570
+K + Y++P PIQ Q PI M R + K GK +G L
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVL 585
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 551 KTLAYILPAIVHINNQPPIXRXDGPIAWV 637
KTL ++LP + HI +QPP+ DGPI V
Sbjct: 579 KTLGFVLPMLRHIKDQPPVEAGDGPIGLV 607
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +1
Query: 292 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 471
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 472 TPIQAQGWPIAMLER 516
TPIQ QG P+ + R
Sbjct: 121 TPIQVQGLPVVLSGR 135
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +1
Query: 295 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 474
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 475 PIQAQGWPIAMLER 516
PIQ QG P+ + R
Sbjct: 171 PIQVQGLPVILAGR 184
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/111 (20%), Positives = 52/111 (46%)
Frame = +1
Query: 238 EHATPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 417
E A ++DS ++ ++++ D + + + +R ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 418 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVGLHL 570
+ + V+ GYK+P+PIQ P+ + +R + + GK L
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVL 369
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 445 VKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNVG 561
V + G+ P+PIQAQ WPIAM R +A K GK +G
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG 282
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 340 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 429
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +1
Query: 349 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI + R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 367 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
TV GV H F E N + + +T+GYK+PTPIQA P+A+ R
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 334 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 508 LERI*LAYPKRVPGKNV 558
R + K GK +
Sbjct: 150 DGRDLIGIAKTGSGKTL 166
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRV 543
V SG +V P+ F + + D + ++ Y PTP+Q PI + ER +A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 544 PGK 552
GK
Sbjct: 199 SGK 201
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRV 543
V SG +V P+ F + + D + ++ Y PTP+Q PI + ER +A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 544 PGK 552
GK
Sbjct: 199 SGK 201
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 325 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 498
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 499 IAMLERI*LAYPKRVPGK 552
A+ + LA GK
Sbjct: 143 AALTGKSLLASADTGSGK 160
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 34.3 bits (75), Expect = 0.078
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Frame = +1
Query: 256 WD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFP 426
WD + PF + +P P ++ + + + SG V P+ F E +
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 427 DYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
+ + ++ Y +PTP+Q PI + R +A + GK
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGK 209
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 33.1 bits (72), Expect = 0.18
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Frame = +1
Query: 256 WD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 426
WD PF N DP + + E Y + + SG V P+ F E +
Sbjct: 96 WDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLG 154
Query: 427 DYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
+ + ++ Y +PTP+Q PI R +A + GK
Sbjct: 155 EALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGK 196
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
FE N V +K GYK PTPIQ + P+ +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLIL 63
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
FE+ + G+ G++ P+PIQ + PIA+ R LA K GK
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
FE+ + G+ G++ P+PIQ + PIA+ R LA K GK
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 215 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 99
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 483
PI+ F++ D V +GV GYK+P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/95 (23%), Positives = 38/95 (40%)
Frame = +1
Query: 274 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 453
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 454 MGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGKNV 558
MG+ T IQA+ P M+ L + GK +
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTL 206
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
FE+ + +G+ G+++P+PIQ + PIA+ LA K GK
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
FE+ + +G+ G+++P+PIQ + PIA+ LA K GK
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYPKRVPGK 552
FE+ + +G+ G+++P+PIQ + PIA+ LA K GK
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 235 AEHATPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQY 405
A+ A SW++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 260 AQVANVSWNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +1
Query: 334 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLE 513
EVEE RN E E P + FEE + + + G ++PT IQ P +
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 514 RI*LAYPKRVPGKNV 558
+ +A K GK +
Sbjct: 84 KDVVARAKTGSGKTL 98
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 277 VGVKQNPNWASHVLPSREFFF 215
VGVK+ W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 286 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 441
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 286 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 441
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 96 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 242
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 277 VGVKQNPNWASHVLPSREF 221
VGVK+ W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 277 VGVKQNPNWASHVLPSREF 221
VGVK+ W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 277 VGVKQNPNWASHVLPSREF 221
VGVK+ W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,473
Number of Sequences: 28952
Number of extensions: 298268
Number of successful extensions: 860
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -