Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060827.seq
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    31   0.008
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       29   0.044
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.71 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   3.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   3.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   3.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   3.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   3.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   3.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   3.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   3.8  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   5.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 543 GSNCELCAKGFYGNAIAGTPDDCKPCPC 626
           GS    C KGF G       DDCKP PC
Sbjct: 204 GSYSCKCPKGFQGQNCELNVDDCKPNPC 231



 Score = 28.7 bits (61), Expect = 0.044
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
 Frame = +1

Query: 370 CSCPKAYVGDYCEECAPGFKHEPA-NGGPYSTCI---PCDCNGH--AHICDTGLD 516
           C CPK + G  CE      K  P  NGG     +    C C      +IC+  +D
Sbjct: 208 CKCPKGFQGQNCELNVDDCKPNPCQNGGTCHDLVNSFSCSCPSGTLGYICEINVD 262



 Score = 28.7 bits (61), Expect = 0.044
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCNGHAHICDTGLDSVS 525
           KC+CP+ + G  CE         P   G    C   D  G+   C +G +  +
Sbjct: 361 KCTCPEGFYGKNCEFSGYDCDSNPCQNG--GVCRISDGGGYICDCPSGTNGTN 411



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 519 CICKHNTTGSNCELCAKGFYG 581
           C C    TG NCE+  +GF G
Sbjct: 441 CYCPPKHTGKNCEIYDRGFPG 461



 Score = 26.6 bits (56), Expect = 0.18
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 504 HRTGFCICKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCPC 626
           H  G C+ K    G  C+ C  GF G    G  ++C   PC
Sbjct: 270 HNNGTCLDK--VGGFECK-CPPGFVGPRCEGDINECLSNPC 307



 Score = 26.2 bits (55), Expect = 0.23
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 522 ICKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCPC 626
           +C     G  C  C +GFYG     +  DC   PC
Sbjct: 352 VCTTIHAGHKCT-CPEGFYGKNCEFSGYDCDSNPC 385



 Score = 25.0 bits (52), Expect = 0.54
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 370 CSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCNGHAHICDTGLDSVSVSTIRLVA 549
           C CP  Y G  C E        P      +TC+  + N +  +C  G     V  + +V+
Sbjct: 85  CHCPYGYTGKDCGEYVDWCSTNPCEN--QATCVQ-NKNQYQCLCGVGWTG-KVCDVEMVS 140

Query: 550 TVSSA-RKV 573
              +A RKV
Sbjct: 141 CKDAALRKV 149



 Score = 24.2 bits (50), Expect = 0.94
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 519 CICKHNTTGSNCE 557
           C CK   TGSNC+
Sbjct: 47  CTCKPGFTGSNCQ 59



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCE 408
           +C CP  +VG  CE
Sbjct: 283 ECKCPPGFVGPRCE 296



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/47 (27%), Positives = 17/47 (36%)
 Frame = +1

Query: 370 CSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCNGHAHICDTG 510
           C+C   ++G +CE         P   G   T I     GH   C  G
Sbjct: 324 CNCKLGFMGRHCESKVNFCATSPCQNGGVCTTIHA---GHKCTCPEG 367



 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCI 468
           +C C   Y G YC+         P   G   TC+
Sbjct: 169 RCHCSDGYSGSYCQTEINECDSAPCQNG--GTCL 200



 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 519 CICKHNTTGSNCEL 560
           C C   T G+NCE+
Sbjct: 401 CDCPSGTNGTNCEI 414



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 370 CSCPKAYVGDYCEECAPGF 426
           C CP  + G  CE    GF
Sbjct: 441 CYCPPKHTGKNCEIYDRGF 459


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 0.044
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCNGHAHICDTG 510
           +C C   + G YC E     K  P   G   TC+    N    IC  G
Sbjct: 53  RCQCQPGFTGKYCHENINDCKVNPCENG--GTCVD-KINAFQCICKEG 97



 Score = 26.6 bits (56), Expect = 0.18
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 513 GFCICKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCPC 626
           G C+ K N     C +C +G+ G       DDC P PC
Sbjct: 81  GTCVDKINAF--QC-ICKEGWEGALCNINTDDCSPNPC 115



 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 543 GSNCELCAKGFYGNAIAGTPDDCKPCPC 626
           G  C+ C  GF G       +DCK  PC
Sbjct: 51  GHRCQ-CQPGFTGKYCHENINDCKVNPC 77


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 421 GFKHEPANGGPYSTCIPCDCNGHAHICDTGLDS 519
           GF+      GP+   +P + N HA + D  L S
Sbjct: 182 GFQRSDGTFGPFIVRVPEEDNPHAKLYDYDLSS 214


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  GHYPRGRPDFYFNEHLRTEQSRTH*STSRVYVQT 174
           G Y + +P    + HL++  ++TH S S  Y  +
Sbjct: 71  GDYTQLQPQRLASTHLQSPNTQTHPSASCKYADS 104


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  GHYPRGRPDFYFNEHLRTEQSRTH*STSRVYVQT 174
           G Y + +P    + HL++  ++TH S S  Y  +
Sbjct: 71  GDYTQLQPQRLASTHLQSPNTQTHPSASCKYADS 104


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  GHYPRGRPDFYFNEHLRTEQSRTH*STSRVYVQT 174
           G Y + +P    + HL++  ++TH S S  Y  +
Sbjct: 71  GDYTQLQPQRLASTHLQSPNTQTHPSASCKYADS 104


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  GHYPRGRPDFYFNEHLRTEQSRTH*STSRVYVQT 174
           G Y + +P    + HL++  ++TH S S  Y  +
Sbjct: 71  GDYTQLQPQRLASTHLQSPNTQTHPSASCKYADS 104


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  GHYPRGRPDFYFNEHLRTEQSRTH*STSRVYVQT 174
           G Y + +P    + HL++  ++TH S S  Y  +
Sbjct: 71  GDYTQLQPQRLASTHLQSPNTQTHPSASCKYADS 104


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  GHYPRGRPDFYFNEHLRTEQSRTH*STSRVYVQT 174
           G Y + +P    + HL++  ++TH S S  Y  +
Sbjct: 27  GDYTQLQPQRLASTHLQSPNTQTHPSASCKYADS 60


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  GHYPRGRPDFYFNEHLRTEQSRTH*STSRVYVQT 174
           G Y + +P    + HL++  ++TH S S  Y  +
Sbjct: 71  GDYTQLQPQRLASTHLQSPNTQTHPSASCKYADS 104


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  GHYPRGRPDFYFNEHLRTEQSRTH*STSRVYVQT 174
           G Y + +P    + HL++  ++TH S S  Y  +
Sbjct: 71  GDYTQLQPQRLASTHLQSPNTQTHPSASCKYADS 104


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 466 IPCDCNGHAHIC 501
           +P  CNG+AH C
Sbjct: 337 MPHKCNGNAHNC 348


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 466 IPCDCNGHAHIC 501
           +P  CNG+AH C
Sbjct: 344 MPHKCNGNAHNC 355


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 73  GHYPRGRPDFYFNEHLRTEQSRTH*STSRVYVQT 174
           G Y + +P      HL++  ++TH S S  Y  +
Sbjct: 71  GDYTQLQPQRLAPTHLQSPNTQTHPSASCKYADS 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,833
Number of Sequences: 336
Number of extensions: 3496
Number of successful extensions: 33
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)