Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060827.seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    28   1.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    28   1.3  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    27   2.3  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   3.1  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   4.1  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    26   5.4  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   9.4  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 457 STCIPCDCNGHAHICDTG--LDSVSVSTIRLVATVSSARKVSTG 582
           +T + C C+G  HI DTG  LD+  +  I L + ++     STG
Sbjct: 269 TTAVVCSCSGQFHIVDTGNPLDA-KLMQIPLTSYLTGMDIASTG 311


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 618 KAYSRLEFQR*HSRRNLSRRAHSCYQSYCAYRY 520
           KA+ RLE Q  H R +   + H C    CA R+
Sbjct: 33  KAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRF 65


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 571 PFAQSSQLLPVVLCLQIQNPVRCHKYG 491
           P A  S +L +V CL I  P   HK+G
Sbjct: 494 PVAWGSTILGIVACLMIPIPFVLHKWG 520


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 143 WVLDCSVRKCSLK*KSGRPRG*CPEQMD 60
           WV+ C  R C+L    GRP G CP Q+D
Sbjct: 507 WVV-C--RTCALSRMRGRPVGFCPLQLD 531


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 602 WSSSDSIPVETFRAELTVATSRIVLTDTESSPVSQI 495
           W  ++  P + FR+ +TVA  +  L D   +P++ +
Sbjct: 366 WQYTNQAPTQVFRSAMTVA-RKFTLRDVPQNPMTNL 400


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 32  SLKLGEHSGYPSAQDIILEGARTSISMNIYGQNNPEPTDQPQEYTFRLQEDPRY 193
           S KLG + G  S  ++  E AR        G N P   D P+E    + + P +
Sbjct: 161 SEKLGIYCGVLSGANVANEVAREQFCETTIGFNPPNEVDIPREQIAAVFDRPYF 214


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = +1

Query: 388 YVGDYCEECAPGFKHEPANGGPYSTCIPCDCNGHAHICDTGLDSVSVSTIRLVATVSSAR 567
           Y G  C  C PG +    NG  YS CIP D +  +    +   S + ST    + VSS  
Sbjct: 81  YNGPTC--CEPGSECI-YNGPYYSQCIPVDIDPSS--SSSSAASSTTSTTSSSSLVSSTT 135

Query: 568 KVSTGMLSLELQTTV 612
             S+   ++   T++
Sbjct: 136 LTSSSPSAVSSTTSI 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,141
Number of Sequences: 5004
Number of extensions: 58118
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)