Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060827.seq
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 32 0.45
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 31 0.60
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 30 1.8
12_01_0197 + 1456296-1456668,1456930-1458746 29 3.2
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 29 3.2
05_01_0081 + 544380-544596,544721-544794,544891-544989,545182-54... 29 3.2
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 29 3.2
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 29 4.2
09_06_0169 - 21303270-21303731,21304863-21304996,21305384-21305630 28 7.4
01_06_1707 - 39317617-39318358,39318624-39318709 28 7.4
01_06_1705 + 39312648-39314246 28 7.4
04_04_0206 + 23595268-23595279,23595475-23596317,23597037-235970... 27 9.7
04_03_0624 - 18115559-18115725,18115993-18116872 27 9.7
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 373 SCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPC 474
+CPK G +C+EC G ++ G S C+ C
Sbjct: 788 ACPKGLYGTFCKECPLG-TYKNVTGSSKSLCVQC 820
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 376 CPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCNGHAH 495
CPK G +C+ C G ++ G S C PC N H
Sbjct: 751 CPKGLYGTFCKACPLG-TYKNITGSLKSLCSPCPTNELPH 789
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +3
Query: 525 CKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCP 623
C G+ C+ C G Y N C PCP
Sbjct: 751 CPKGLYGTFCKACPLGTYKNITGSLKSLCSPCP 783
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Frame = +1
Query: 355 NWVEKCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPC-------DCNGHAHICD 504
+W C C + G +C C + PA P IPC C G+ +C+
Sbjct: 261 SWPSDCCCHHGHGGCHCCSCGKAPEPAPAPAPPPPQYIPCYPPQQPYPCGGYRIVCE 317
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 608 VVWSSSDSIPVETFRAELTV-ATSRIVLTDTESSPVSQ 498
+VWS++ PV + R+E+T+ IVLTD + + V Q
Sbjct: 85 IVWSANRGRPVHSRRSEITLRKDGNIVLTDYDGTVVWQ 122
>11_01_0191 +
1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 608 VVWSSSDSIPVETFRAELTV-ATSRIVLTDTESSPVSQ 498
+VWS++ PV + R+E+T+ IVLTD + + V Q
Sbjct: 403 IVWSANRGRPVHSRRSEITLRKDGNIVLTDYDGTVVWQ 440
>05_01_0081 +
544380-544596,544721-544794,544891-544989,545182-545277
Length = 161
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 283 GVGYLINFKLETAKIGREKGAAPANWVE-KCSCP 381
G+GYLI + + +A +G +G N V K SCP
Sbjct: 59 GLGYLIGYPISSASVGALQGLLTNNLVALKGSCP 92
>04_01_0422 +
5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 376 CPKAYVGDYCEECAPGFKHEPANGGPYSTCIPC 474
CP G +C EC G ++ G S C+PC
Sbjct: 796 CPVGLYGTFCTECPIG-TYKNVVGSDSSLCMPC 827
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 543 QSYCAYRYRIQSGVTNMGMSVT--IARYASRVRSAVGRLVLE 424
+++C Y Q N+G ++ AR +RSA+GR + E
Sbjct: 201 KTFCVYYGHFQGQYANLGTKISNSYARVVGFLRSAIGRFITE 242
>09_06_0169 - 21303270-21303731,21304863-21304996,21305384-21305630
Length = 280
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 239 QNLTATKSGEHTTKAVSGT*STSSWKRPRLAGRKGRLQLTGWRNAR--VPKPMLGTTV 406
Q + + + G HT+ A STSS LAG KG + AR VP P LGT V
Sbjct: 16 QKMVSARGGRHTSSATDDCCSTSS-----LAG-KGHCTVYTADGARFEVPLPYLGTMV 67
>01_06_1707 - 39317617-39318358,39318624-39318709
Length = 275
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 493 HICDTGLDSVSVSTIRLVATVSSARKVSTGMLSLELQTTVSLVP 624
HI D G+D+ I V + S K S G L+ LQT L P
Sbjct: 94 HIDDLGVDADEAVAINSVLELHSVVKESRGALNSVLQTIRKLSP 137
>01_06_1705 + 39312648-39314246
Length = 532
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 493 HICDTGLDSVSVSTIRLVATVSSARKVSTGMLSLELQTTVSLVP 624
HI D G+D+ I V + S K S G L+ LQT L P
Sbjct: 351 HIDDLGVDADEAVAINSVLELHSVVKESRGALNSVLQTIRKLSP 394
>04_04_0206 +
23595268-23595279,23595475-23596317,23597037-23597088,
23597328-23597395,23597482-23597585,23597681-23597768,
23598405-23598722
Length = 494
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 305 SSWKRPRLAGR-KGRLQLTGWRNARVPKPMLGTTVKSAHQGSSTSLPTADR 454
+++ RP G +GRL L G + K TV +A G ST +PT ++
Sbjct: 420 TAYPRPAFPGAMRGRLPLRGGARSLQWKRDNADTVDAAKPGHSTPIPTGNQ 470
>04_03_0624 - 18115559-18115725,18115993-18116872
Length = 348
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 519 CICKHNTTGSNCELCAKGFYGNAI--AGTPDDCK 614
C N G C C+KGFYGN + PD C+
Sbjct: 261 CFNSLNGPGYICN-CSKGFYGNPYLKSDDPDSCQ 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,647,672
Number of Sequences: 37544
Number of extensions: 416054
Number of successful extensions: 1113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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