Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060827.seq
         (647 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...   105   9e-25
AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.        28   0.22 
AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.        28   0.22 
AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.        28   0.22 
AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.        28   0.22 
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    28   0.22 
DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domai...    26   0.89 
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   2.1  
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    25   2.7  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    23   6.3  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score =  105 bits (253), Expect = 9e-25
 Identities = 41/84 (48%), Positives = 55/84 (65%)
 Frame = +1

Query: 256 KIRGTYNKGGVGYLINFKLETAKIGREKGAAPANWVEKCSCPKAYVGDYCEECAPGFKHE 435
           KIR  Y   G   L + +L+TA  G       A W+E+C+CP+ Y+G +CE CAPG++H 
Sbjct: 657 KIRAIYGDYGEAILDDVELQTAHRGA--AGRQATWIEQCTCPEGYLGQFCESCAPGYRHN 714

Query: 436 PANGGPYSTCIPCDCNGHAHICDT 507
           PA GGP+  C+PCDCN HA ICD+
Sbjct: 715 PARGGPFMPCVPCDCNKHAEICDS 738



 Score = 77.4 bits (182), Expect = 4e-16
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = +2

Query: 11  YNHDMKFSLKL-GEHSGYPSAQDIILEGARTSISMNIYGQNNPEPTDQPQEYTFRLQEDP 187
           YN   KF L+L G+     S  D++L+G  +SIS+ I+ QN   P+++  E+ FRL E+P
Sbjct: 574 YNRLFKFRLQLVGQPRVEVSPYDVVLQGGNSSISLPIFAQNQRMPSEESHEFAFRLHENP 633

Query: 188 RYGWSPTLSNYEFMSILQNLTATK 259
            Y W P+ S   FMSIL NLTA K
Sbjct: 634 EYTWHPSNSGRGFMSILSNLTAVK 657



 Score = 74.5 bits (175), Expect = 3e-15
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +3

Query: 510 TGFCICKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCPC 626
           TG CIC+HNT G  C+ CAKG+YGNA+ GTP DCK CPC
Sbjct: 740 TGRCICQHNTAGDTCDQCAKGYYGNALGGTPYDCKRCPC 778



 Score = 42.3 bits (95), Expect = 1e-05
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 376 CPKAYVGDYCEECAPGFKHEPAN-GGPYSTCIPCDCNGH 489
           CP  Y G  CE C+ G+  +P    G    C PCDCNG+
Sbjct: 797 CPVGYFGPRCELCSDGYYGDPTGVYGSVRMCQPCDCNGN 835



 Score = 42.3 bits (95), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 510 TGFCI-CKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCPC 626
           TG C+ C HNT G +C+ C  G +G+ +A     C+ C C
Sbjct: 848 TGECLKCIHNTAGPHCDQCLPGHFGDPLAEPHGSCEECSC 887



 Score = 37.5 bits (83), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 510 TGFCICKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCPC 626
           TG C CK N  G +C  C  G++ N  A     C PC C
Sbjct: 462 TGVCSCKENVEGRHCRECRLGYF-NLDAENKFGCTPCFC 499



 Score = 36.7 bits (81), Expect = 6e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +3

Query: 507 RTGFCICKHNTTGSNCELCAKGF----YGNAIAGTPDDCKPCPC 626
           RT  C C H T G +C+ C   +    +G A +    +CKPC C
Sbjct: 301 RTRVCKCMHFTDGPDCDRCLPFYNDAPWGRATSKNVHECKPCNC 344



 Score = 36.3 bits (80), Expect = 8e-04
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 510 TGFCI-CKHNTTGSNCELCAKGFYGN--AIAGTPDDCKPCPC 626
           T  C+ C     G  CELC+ G+YG+   + G+   C+PC C
Sbjct: 791 TVICLECPVGYFGPRCELCSDGYYGDPTGVYGSVRMCQPCDC 832



 Score = 35.9 bits (79), Expect = 0.001
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +1

Query: 370 CSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCNGHAHICDTGLDSVSVST 534
           CSC +   G +C EC  G+ +  A       C PC C GH   C +      VST
Sbjct: 465 CSCKENVEGRHCRECRLGYFNLDAEN--KFGCTPCFCYGHTLECTSASGYSIVST 517



 Score = 35.9 bits (79), Expect = 0.001
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +3

Query: 519 CICKHNTTGSNCELCAKGFYGNAIAGTP-DDCKPCPCXK 632
           C C     G  CE CA G+  N   G P   C PC C K
Sbjct: 693 CTCPEGYLGQFCESCAPGYRHNPARGGPFMPCVPCDCNK 731



 Score = 35.9 bits (79), Expect = 0.001
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCNGHAHICDTGLDSV 522
           +C C     GD C++CA G+      G PY  C  C C  +        D+V
Sbjct: 742 RCICQHNTAGDTCDQCAKGYYGNALGGTPYD-CKRCPCPNNGACMQMAGDTV 792



 Score = 35.1 bits (77), Expect = 0.002
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 510  TGFCICKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCPC 626
            +G C CK    G  C+ CA  +YG     + D C  C C
Sbjct: 955  SGDCFCKPGVVGKKCDKCAPAYYG----FSEDGCHACDC 989



 Score = 33.9 bits (74), Expect = 0.004
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +1

Query: 370 CSCPKAYVGDYCEECAPGFKHEP---ANGGPYSTCIPCDCNGHAHIC 501
           C C     G  C+ C P +   P   A       C PC+CNG++  C
Sbjct: 305 CKCMHFTDGPDCDRCLPFYNDAPWGRATSKNVHECKPCNCNGYSTKC 351



 Score = 33.5 bits (73), Expect = 0.006
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 513 GFCICKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCPCXKQ 635
           G C CK   TG  C+ C   ++       P  C+PC C ++
Sbjct: 413 GRCQCKPGVTGEKCDRCDSNYFNFG----PHGCQPCNCDER 449



 Score = 33.1 bits (72), Expect = 0.008
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 513  GFCICKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCPC 626
            G C CK N  G  C  C  G Y N ++G  + C+ C C
Sbjct: 907  GNCHCKPNVIGRTCNECKNG-YWNIVSG--NGCESCNC 941



 Score = 30.3 bits (65), Expect = 0.055
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 364 EKCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDC 480
           E   C     G +C++C PG   +P    P+ +C  C C
Sbjct: 850 ECLKCIHNTAGPHCDQCLPGHFGDPL-AEPHGSCEECSC 887



 Score = 29.9 bits (64), Expect = 0.073
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 370  CSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCN 483
            C C    VG  C++CAP +     +G     C  CDC+
Sbjct: 958  CFCKPGVVGKKCDKCAPAYYGFSEDG-----CHACDCD 990



 Score = 27.5 bits (58), Expect = 0.39
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +1

Query: 334  EKGAAPANWVE-KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCN---GHAHIC 501
            EKG +  + +   C C    +G  C EC  G+ +  +  G    C  C+C+    +   C
Sbjct: 896  EKGISICDAINGNCHCKPNVIGRTCNECKNGYWNIVSGNG----CESCNCDPIGSYNASC 951

Query: 502  DT 507
            DT
Sbjct: 952  DT 953



 Score = 27.1 bits (57), Expect = 0.51
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 513 GFCI-CKHNTTGSNCELCAKGFY 578
           G CI C  N  G NCE C + F+
Sbjct: 365 GHCIDCGANRDGPNCERCKENFF 387



 Score = 24.2 bits (50), Expect = 3.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 472 CDCNGHAHICDT 507
           C CNGHA  C T
Sbjct: 282 CKCNGHASECTT 293


>AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPC 474
           +CSC +++ G +C E   G   +PA    Y  CI C
Sbjct: 46  RCSCDESFFGPFC-ETKDG--EQPALCSSYEDCIRC 78


>AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPC 474
           +CSC +++ G +C E   G   +PA    Y  CI C
Sbjct: 46  RCSCDESFFGPFC-ETKDG--EQPALCSSYEDCIRC 78


>AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPC 474
           +CSC +++ G +C E   G   +PA    Y  CI C
Sbjct: 46  RCSCDESFFGPFC-ETKDG--EQPALCSSYEDCIRC 78


>AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPC 474
           +CSC +++ G +C E   G   +PA    Y  CI C
Sbjct: 46  RCSCDESFFGPFC-ETKDG--EQPALCSSYEDCIRC 78


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 367 KCSCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPC 474
           +CSC +++ G +C E   G   +PA    Y  CI C
Sbjct: 622 RCSCDESFFGPFC-ETKDG--EQPALCSSYEDCIRC 654



 Score = 24.6 bits (51), Expect = 2.7
 Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
 Frame = +3

Query: 513 GFCICKHNTTGSNCELCAKGFYGNAIAGTPD----DCKPCPC 626
           G C C     G +CE         +I G PD     C  C C
Sbjct: 544 GQCYCNPGFEGEHCECNECATIDGSICGGPDHGICTCGTCSC 585


>DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 343 AAPANWVEKCSCPKAYVGDYCEECAPGFK 429
           A   + VE C C   YV D  + C P ++
Sbjct: 87  ACTKHCVEGCFCRNGYVRDKYDRCIPSYR 115


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 615 AYSRLEFQR*HSRRNLSRRAHSCYQSYCAYRYR 517
           AY   + +R    R++    HS Y SY  +RYR
Sbjct: 421 AYRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYR 453


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 634 CFXQGQGLQSSGVPAIAFP 578
           CF  G  L  S +P+IAFP
Sbjct: 66  CFRDGIALPVSFIPSIAFP 84


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 95  RTSISMNIYGQNNPEPTDQPQEYTFRLQEDPRYG 196
           R + S  ++ Q  P P   PQ Y+      P YG
Sbjct: 365 RFTQSTAMHNQPPPPPYQPPQPYSLMASVAPSYG 398


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,052
Number of Sequences: 2352
Number of extensions: 16709
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)