Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060827.seq
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.83 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   1.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   1.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.8  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 460 TCIPCDCNGHAHICDTGLDSVSVSTIRLVATVSSARKVSTGMLSLELQ 603
           TC+ C  + H   C T    VS   I   A+V +A +  TG+ +++++
Sbjct: 12  TCLICSPSVH---CGTRPSFVSDEMIATAASVVNACQTQTGVATVDIE 56


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 550 LLPVVLCLQIQNPVRCHKYGHVRYNRKVC 464
           ++P  LC++I  P    + G++R  +KVC
Sbjct: 57  VVPKPLCIKICAPGCVCRLGYLRNKKKVC 85


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 550 LLPVVLCLQIQNPVRCHKYGHVRYNRKVC 464
           ++P  LC++I  P    + G++R  +KVC
Sbjct: 57  VVPKPLCIKICAPGCVCRLGYLRNKKKVC 85


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 152 PQEYTFRLQEDPRYG 196
           P  Y FR  ++PR+G
Sbjct: 162 PNAYRFRPPQNPRFG 176


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 152 PQEYTFRLQEDPRYG 196
           P  Y FR  ++PR+G
Sbjct: 162 PNAYRFRPPQNPRFG 176


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 152 PQEYTFRLQEDPRYG 196
           P  Y FR  ++PR+G
Sbjct: 400 PNAYRFRPPQNPRFG 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,832
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)