Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060827.seq
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64370.1 68414.m07295 expressed protein 39 0.003
At3g03030.1 68416.m00298 F-box family protein contains F-box dom... 32 0.38
At3g03040.1 68416.m00299 F-box family protein contains F-box dom... 31 0.50
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,... 31 0.66
At4g38350.1 68417.m05422 patched family protein similar to SP|O1... 30 1.2
At4g32920.1 68417.m04685 glycine-rich protein 30 1.2
At4g13960.1 68417.m02159 F-box family protein contains F-box dom... 30 1.2
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ... 29 2.0
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c... 29 2.0
At5g39970.1 68418.m04847 expressed protein low similarity to up-... 29 3.5
At3g59000.1 68416.m06576 F-box family protein contains F-box dom... 29 3.5
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15... 29 3.5
At5g41190.1 68418.m05006 expressed protein ; expression support... 28 4.7
At3g59210.1 68416.m06601 F-box family protein contains F-box dom... 28 4.7
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 4.7
At1g79680.1 68414.m09293 wall-associated kinase, putative simila... 28 4.7
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15... 28 6.1
>At1g64370.1 68414.m07295 expressed protein
Length = 178
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 29 FSLKLGEHSGYPSAQDIILEGARTSISMNIYGQ-NNPEPTDQPQEYTFRLQEDPRYGWSP 205
+ + G+ +GY +Q EG S S YGQ +N E +Q +E + Q P YG SP
Sbjct: 12 YEVAQGQRNGYGQSQSHNHEGYGQSQSRGGYGQIHNREGYNQNREGYSQSQSRPVYGLSP 71
Query: 206 TLSNYEFMSILQNLTATKSGE 268
TL++ L L ++G+
Sbjct: 72 TLNHRSHGGFLDGLFKGQNGQ 92
>At3g03030.1 68416.m00298 F-box family protein contains F-box domain
Pfam:PF00646
Length = 474
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 477 IARYASRVRSAVGRLVLEPWCALFTVVPNIGFGTRAFLHP--VSWSR 343
I + + SA+ ++ + W LFT+VPN+ +LHP W R
Sbjct: 15 ILSFLTTKESALTSVLSKKWRNLFTLVPNLDLDDSEYLHPEETKWER 61
>At3g03040.1 68416.m00299 F-box family protein contains F-box domain
Pfam:PF00646
Length = 472
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 477 IARYASRVRSAVGRLVLEPWCALFTVVPNIGFGTRAFLHPVSWSR 343
I + + SA ++ + W LF +VPN+ F FLHP R
Sbjct: 15 ILSFLTTKESASTSVLSKKWRNLFALVPNLDFDDSEFLHPEEGKR 59
>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
Arabidopsis thaliana
Length = 1411
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 373 SCPKAYVGDYCEECAPG-FKHEPANGGPYSTCIPC 474
+CPK G +C+EC G FK+ G S C PC
Sbjct: 796 ACPKGLHGIFCKECPSGTFKN--VTGSDPSLCRPC 828
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 525 CKHNTTGSNCELCAKGFYGNAIAGTPDDCKPCP 623
C G C+ C G + N P C+PCP
Sbjct: 797 CPKGLHGIFCKECPSGTFKNVTGSDPSLCRPCP 829
>At4g38350.1 68417.m05422 patched family protein similar to
SP|O15118 Niemann-Pick C1 protein precursor from Homo
sapiens (PID:g2276463); contains Pfam profile PF02460
Patched family
Length = 1064
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 519 RIQSGVTNMGMSVTIARYASRVRSAVGRLVLEPWCALFTV 400
RI S + +G S+T+A + + AVG V P C +F++
Sbjct: 655 RISSALVEVGPSITLASLSEVLAFAVGAFVPMPACRIFSM 694
>At4g32920.1 68417.m04685 glycine-rich protein
Length = 1432
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 373 SCPKAYVGDYCEECAPGFKHEPANGGPYSTCIPCDCNGHAH 495
+CP+ G +CEEC P ++ G + C C N H
Sbjct: 793 ACPEGLYGLFCEEC-PSGTYKNVTGSDKALCHLCPANDIPH 832
>At4g13960.1 68417.m02159 F-box family protein contains F-box domain
Pfam:PF00646
Length = 434
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 477 IARYASRVRSAVGRLVLEPWCALFTVVPNIGFGTRAFLHP 358
I + + +A+ ++ + W LFT VPN+ FLHP
Sbjct: 15 ILSFLTTKEAALTSILSKRWRNLFTFVPNLDIDDSVFLHP 54
>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
unknown protein (emb|CAB87688.1)
Length = 1417
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 376 CPKAYVGDYCEECAPGFKHEPANGGPYSTCIPC 474
CPK G +C EC G ++ G C PC
Sbjct: 777 CPKGLYGTFCLECPIG-TYKNVEGSDKRLCTPC 808
>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
contains 5 WD-40 repeats (PF00400); contains
Beige/BEACH domain (Pfam PF02138); FACTOR ASSOCIATED
WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
sapiens;similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 909
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 197 WSPTLSNYEFMSILQNLTATKSGEHT 274
W LSN+E++ +L L + G+HT
Sbjct: 352 WKGELSNFEYLLVLNKLAGRRWGDHT 377
>At5g39970.1 68418.m04847 expressed protein low similarity to
up-regulated by thyroid hormone in tadpoles; expressed
specifically in the tail and only at metamorphosis;
membrane bound or extracellular protein; C-terminal
basic region [Xenopus laevis] GI:1234787
Length = 690
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 571 PFAQSSQLLPVVLCLQIQNPVRC 503
PF+Q LLP + + ++NP RC
Sbjct: 431 PFSQDKNLLPEIWAMGVRNPWRC 453
>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
Pfam:PF00646
Length = 491
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 477 IARYASRVRSAVGRLVLEPWCALFTVVPNIGFGTRAFLHP 358
I + + +A+ L+ + W L VPN+ F FLHP
Sbjct: 15 ILSFLTTKEAALTSLLSKRWRYLIAFVPNLAFDDIVFLHP 54
>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 84
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +1
Query: 337 KGAAPANWVEKCSCPKAYV-GDYC----EECAPG-FKHEPANGGPYSTCIPCDC 480
KG+A A+ ++C CP G+ C E + G +H G + C PC+C
Sbjct: 6 KGSASASCNDRCGCPSPCPGGESCRLMMSEASGGDQEHNTCPCGEHCGCNPCNC 59
>At5g41190.1 68418.m05006 expressed protein ; expression supported
by MPSS
Length = 602
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = +2
Query: 23 MKFSLKLGEHSGYPSAQDIILEGARTSISMNIYGQNNPEPTDQPQEYTF--RLQEDPRYG 196
+KF+ G+ S D+ L ++ +YG N P + RL E G
Sbjct: 108 IKFARATGDLQSL-SDVDLKLIALSYTLEAQVYGTKNLRDVPPPIQTVRVKRLPEKDLPG 166
Query: 197 WSPTLSNYEFMSILQNLTATKSGEHT 274
W ++N E L+N T KS ++
Sbjct: 167 WGSNVANLEEWEALENETEEKSNANS 192
>At3g59210.1 68416.m06601 F-box family protein contains F-box domain
Pfam:PF00646
Length = 484
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 462 SRVRSAVGRLVLEPWCALFTVVPNIGFGTRAFLHP 358
S +A+ L+ + W LF +VPN+ F LHP
Sbjct: 25 STKEAALTSLLSKRWRYLFALVPNLDFDVLPSLHP 59
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 149 QPQEYTFRLQEDPRYGWSPTLSNYEFMSILQNLTATKSGEHTTK 280
+P+ T ++ P + +SP + F S+ + T T+ + TTK
Sbjct: 39 RPRATTVSVRTTPSFFYSPVVRRQRFSSVSASATQTEDSDVTTK 82
>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
to wall-associated kinase 2 GI:4826399 from [Arabidopsis
thaliana]
Length = 769
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 519 CICKHN--TTGSNCELCAKGFYGNAIAGTPDDCK 614
C+C +N TTG CA GF GN P +CK
Sbjct: 291 CLCDYNSTTTGYATCSCASGFEGNPY--IPGECK 322
>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 85
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Frame = +1
Query: 337 KGAAPANWVEKCSCPKAYVGDYCEEC-----APG--FKHEPANGGPYSTCIPCDC 480
KG+A A+ ++C CP G C A G +H G + C PC+C
Sbjct: 6 KGSASASCNDRCGCPSPCPGGESCRCKMMSEASGGDQEHNTCPCGEHCGCNPCNC 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,653,291
Number of Sequences: 28952
Number of extensions: 321126
Number of successful extensions: 943
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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