Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060823.seq
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 36 0.007
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 30 0.35
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.82
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 28 1.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.4
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 28 1.4
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 1.9
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 1.9
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 1.9
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 2.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 26 4.4
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 4.4
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 4.4
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 5.8
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.8
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 26 5.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 5.8
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 5.8
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 7.6
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +3
Query: 528 DQLIMHQKVELLEAFVGFETNNKYTVMXSVGQKVYYAIE 644
D LI+ +++E++ F+G+E N+Y ++ GQ + Y E
Sbjct: 77 DVLIVERQLEMMNVFLGYEQANRYVILNQQGQHLGYIAE 115
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 29.9 bits (64), Expect = 0.35
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 160 SHKPTPYSPNFPASHGYV--PPPEGEKPNESYPIILKAAILAHHPL 291
SH P ++P P S V PPP + P+ YP+ L + L H P+
Sbjct: 136 SHHPPLHNP-LPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPI 180
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 0.82
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = +3
Query: 324 QPLPGMQHGFQPGF--QPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQ--GLQ 491
QP+ + G QP + G QP PG QP MQ PQ G MPQ G+Q
Sbjct: 633 QPMAPQRTGMQPMMPQRTGMQPQM-PGMQQPMAPQRTGMQPMAPQRTGMQPMMPQRTGMQ 691
Query: 492 -QLP 500
Q+P
Sbjct: 692 PQMP 695
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = +3
Query: 348 GFQPGFQPGYQPGFAP---GY--PQPSGYPVPVMQQPG----PQAPGG 464
GF Q G PGFAP G+ PQP+G+ + QQP PQ GG
Sbjct: 110 GFMQPQQTGAIPGFAPQPTGFVQPQPTGF---MSQQPASFMQPQRTGG 154
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +3
Query: 324 QPLPGMQHGFQP---GFQPGYQPGFAPGYPQPSGYPVPVMQQ 440
QP+ + G QP GFQ P PQ +G+ P+M Q
Sbjct: 456 QPMMPQRTGLQPQMTGFQQPMVPQRTGMQPQMTGFQQPMMPQ 497
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 206 DMYLHQKEKSQMKVTPSSSKRLSWPTTHSYATPRPTS 316
++ L +K+ +++ TP S S HS+ TPR TS
Sbjct: 398 ELKLRKKQTTKVSGTPKSKHAGSTQEWHSHTTPRSTS 434
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 321 AQPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGG 464
A P P G P QP Y P YP Y PV QP A G
Sbjct: 98 AAPQPYPPQGGYPQ-QPYYYPNQPNYYPAQPAYAQPVYAQPATSARRG 144
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPG 398
PG G PG PG PG APG
Sbjct: 615 PGGMPGAAPGAAPGAAPGAAPG 636
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 342 QHGFQPGFQPGYQPGFAPG 398
Q G PG PG PG APG
Sbjct: 610 QAGGAPGGMPGAAPGAAPG 628
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 164 INQHHTHQI-SLQVMDMYLHQKEKSQMKVTPSSSKRLSWPTTHSYATPR 307
+ Q H Q+ S+Q QK+ Q TP S PTTH P+
Sbjct: 256 LKQLHYRQLQSVQQQQKQHQQKKTPQSGSTPQMQNTTSQPTTHDTHPPK 304
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 513 YLSMIDQLIMHQKVELL-EAFVGFET-NNKYTVMXSVGQKVYYAIEDNDC 656
YL + L+ + +++ EA VGF T NN ++ + Q V Y ++D +C
Sbjct: 717 YLKEDEMLVASVRDDIVSEAVVGFSTDNNGQKILADISQ-VCYCLDDLEC 765
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 227 EKSQMKVTPSSSKRLSWPTTHSYATPRPTSWGTTPSGHAA 346
+K+++ VTP S+ P S ATP PTS TP+ AA
Sbjct: 198 KKNKVAVTPQSTL----PPGFSPATPAPTSAANTPATIAA 233
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = +2
Query: 125 YTKKVTKRS*QCHINQHHTHQISLQVMDMYLHQKEKSQMKVTPSSSKRLSWP---TTHSY 295
Y TKRS H HH Q+ L Y HQ + + S++ S P TH
Sbjct: 101 YKSNSTKRSHSRHEEIHHQQQLHLN--HQYQHQHKNVAANSIDNLSRQYSQPNHINTHD- 157
Query: 296 ATPRPTSWGTTPS 334
+ P S+G S
Sbjct: 158 SVNSPPSYGIMAS 170
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 257 SSKRLSWPTTHSYATPRPTSWGTTPSGHAAWVPARIS 367
S+ R S P+ HS A+P PTS S A+ PAR S
Sbjct: 1250 STPRSSVPSPHSNASPSPTS-----SSMASAAPARTS 1281
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYP---VPV-----MQQPGPQAPGG 464
P P Q P + P Q GY P GYP P +QQP PGG
Sbjct: 14 PAPPQQAYGGPNYYPPQQNYPQQGYAPPQGYPQGGYPAQQPMYVQQPQASDPGG 67
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Frame = +3
Query: 357 PGFQPGYQPGFAPGYPQPSGYPV-PVMQQPGPQAPG 461
P P P Y P Y V QQP PQ PG
Sbjct: 180 PAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPG 215
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 148 ELTMSHKPTPYSPNFPASHGYVPPPEGEK 234
E+T+++ S F S+G++P PEG++
Sbjct: 226 EVTINYGSEKGSAEFLFSYGFLPEPEGDR 254
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 489 QQLPSRLEYLSMIDQLIMHQKVELLEAFVGFE 584
+QLPSR+ + +M +H+K++ L VG E
Sbjct: 1029 EQLPSRVLFYAMDRYFSIHKKLKQLLELVGVE 1060
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 351 FQPGFQPGYQPGFAPGYPQ-PSGYPVPVMQQPGPQ 452
+ P QPGY P + P Y Q P P M + G Q
Sbjct: 410 YGPILQPGYVPQYYPVYHQTPYTQNFPNMSRSGSQ 444
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 348 GFQPGFQPGYQPGFAP--GYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQL 497
G G QP P G+P P+G +P Q Q + + P +QQ+
Sbjct: 211 GGMNGLQPFPTQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQYSSHPSRMQQM 262
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 166 KPTPYSPNFPASHGYVPPPEGEKPNES 246
KPTP+ + PA V P E KP+ S
Sbjct: 252 KPTPFESHGPAKQISVQPSEHPKPSIS 278
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 248 TPSSSKRLSWPTTHSY-ATPRPTS 316
TPSS K LSW Y AT PTS
Sbjct: 523 TPSSIKSLSWHRRGDYLATSSPTS 546
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +2
Query: 209 MYLHQKEKSQMKVTPSSSKRLSW-------PTTHSYATPRPTSWGTTPSGHAAWVPARIS 367
+YL K+K KV P S + L PT A RP+ GTT + +A + + +
Sbjct: 229 VYLDGKQKPPSKVMPKSRRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANSSSASISSLHN 288
Query: 368 T 370
T
Sbjct: 289 T 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,851
Number of Sequences: 5004
Number of extensions: 56913
Number of successful extensions: 212
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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