Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060823.seq
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0) 54 1e-07
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 39 0.003
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12) 38 0.006
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 37 0.013
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 37 0.013
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 37 0.013
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 35 0.053
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 35 0.053
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 34 0.092
SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.092
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20) 33 0.28
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.65
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 31 0.65
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 31 0.86
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.1
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 31 1.1
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 31 1.1
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 30 1.5
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 30 1.5
SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022) 29 2.6
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 2.6
SB_38811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 3.5
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 3.5
SB_7166| Best HMM Match : RBM1CTR (HMM E-Value=7.6) 29 3.5
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 28 6.0
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 28 6.0
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_37690| Best HMM Match : IgG_binding_B (HMM E-Value=4.2) 28 8.0
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 28 8.0
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07) 28 8.0
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
Length = 554
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/93 (38%), Positives = 46/93 (49%)
Frame = +3
Query: 378 QPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSRLEYLSMIDQLIMHQKVE 557
Q G+A G P GYP P P PQ PG P + Y + + Q Q
Sbjct: 249 QSGYA-GQPPQQGYPPPQGGYPPPQQPG----------YNPQQPGYGAPVAQ----QPGY 293
Query: 558 LLEAFVGFETNNKYTVMXSVGQKVYYAIEDNDC 656
AF GFETNNKY + ++GQ+V++A ED DC
Sbjct: 294 PPPAFTGFETNNKYKITNNLGQQVFFAAEDTDC 326
Score = 34.7 bits (76), Expect = 0.070
Identities = 20/45 (44%), Positives = 21/45 (46%)
Frame = +3
Query: 324 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 458
Q P Q G+ P QPGY PQ GY PV QQPG P
Sbjct: 259 QGYPPPQGGYPPPQQPGYN-------PQQPGYGAPVAQQPGYPPP 296
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/53 (47%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 336 GMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMN-MPQGLQ 491
G Q G Q G QPG QP PG QP P QPG Q PGG P G Q
Sbjct: 1185 GNQKGIQSGSQPGIQPNGQPGVNQPGSQP---GNQPGNQ-PGGQAGPAPAGTQ 1233
Score = 36.7 bits (81), Expect = 0.017
Identities = 25/57 (43%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAP-----------GYPQPSGYP----VPVMQQPGPQAP 458
PG Q G QPG QPG Q G AP GYP P G+P P Q G Q P
Sbjct: 1209 PGSQPGNQPGNQPGGQAGPAPAGTQSGSSNQIGYPTPQGFPPSFGFPTYNQYGAQNP 1265
>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
Length = 828
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +3
Query: 333 PGMQHGFQ--PGFQPGYQ--PGFAPGYPQPSGY 419
PG G+ PG+ PGY PG+ PGYP P GY
Sbjct: 571 PGYGPGYTNTPGYGPGYTNPPGYGPGYPNPPGY 603
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 333 PGMQHGFQ--PGFQPGYQ--PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGL 488
PG G+ PG+ PGY PG+ PGY P GY P P PG + GL
Sbjct: 561 PGYGPGYTNPPGYGPGYTNTPGYGPGYTNPPGYG-PGYPNPPGYGPGYTNPLATGL 615
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 357 PGFQPGYQ--PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMP 479
PG+ PGY PG+ PGY P GY PG P G+ N P
Sbjct: 551 PGYGPGYTNPPGYGPGYTNPPGYGPGYTNTPG-YGP-GYTNPP 591
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 363 FQPGYQ--PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMP 479
++PGY PG+ PGY P GY PG P G+ N P
Sbjct: 543 WEPGYTNPPGYGPGYTNPPGYGPGYTNPPG-YGP-GYTNTP 581
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +3
Query: 357 PGFQPGYQ--PGFAPGYPQPSGYPVPVMQQPG 446
PG+ PGY P + PGY GY PG
Sbjct: 781 PGYGPGYTNPPDYGPGYTNSLGYGPRYTNPPG 812
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +3
Query: 360 GFQPGYQ--PGFAPGYPQPSGY 419
G+ PGY PG+ PGY P Y
Sbjct: 772 GYGPGYTNPPGYGPGYTNPPDY 793
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYP 422
P PG G +PG++PGY P F PG P P
Sbjct: 482 PRPGRTPGRRPGYRPGYIPPFVPGIIHPGRRP 513
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 461
P PG + +PG PG +PG+ PGY P VP + PG + PG
Sbjct: 474 PRPGYRPWPRPGRTPGRRPGYRPGYIPPF---VPGIIHPG-RRPG 514
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +3
Query: 330 LPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 461
+PG G +PG +PG P F PG PS P ++PGP+ PG
Sbjct: 520 IPGRTPGRRPGGRPGNIPPFVPGLIIPSRRP---GKRPGPR-PG 559
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGG 464
PG + G++PG+ P + PG +P P + + + PGG
Sbjct: 488 PGRRPGYRPGYIPPFVPGIIHPGRRPGWRPGGIPGRTPGRRPGG 531
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPV 425
PG G+ PG PGY PG+AP Y P+
Sbjct: 15 PGYPPGYAPGHPPGYPPGYAPDYHTVMNSPI 45
Score = 36.7 bits (81), Expect = 0.017
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 336 GMQHGFQPGFQPGYQPGFAPGYP 404
G G+ PG+ PGY PG PGYP
Sbjct: 8 GHPPGYAPGYPPGYAPGHPPGYP 30
Score = 36.7 bits (81), Expect = 0.017
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPGY 401
PG G+ PG+ PG+ PG+ PGY
Sbjct: 11 PGYAPGYPPGYAPGHPPGYPPGY 33
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/48 (45%), Positives = 24/48 (50%)
Frame = +3
Query: 357 PGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLP 500
PG QP Q G+ PGY QP P P P PGG+ P G QQ P
Sbjct: 159 PGTQPPGQGGY-PGYNQP-----PPGHYPAPGQPGGYYPPPGGYQQPP 200
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVM-QQPGPQAPGGWMNMP-QGLQQLP 500
P + + PG+ P + G PQ GYP V + P P+ PG + P QG+Q++P
Sbjct: 579 PQQFNQYPPGYTPPHLTRAPMGGPQGIGYPQGVQGRMPYPRPPGDGVAGPAQGMQRMP 636
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 35.1 bits (77), Expect = 0.053
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 324 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQ-LP 500
Q + GMQ G Q Q G QPG G Q P MQQ G Q G M QG+ Q +P
Sbjct: 1960 QGMQGMQQGMQHPMQQGMQPGMQMGMHQGMQQMQPNMQQ-GMQ-QGMQQGMQQGIPQGMP 2017
Query: 501 SRLEYLSM 524
++ +M
Sbjct: 2018 PSIQPQNM 2025
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +3
Query: 336 GMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQ 494
GMQ QP Q G Q G G Q +P QP PG +M Q + Q
Sbjct: 1988 GMQQ-MQPNMQQGMQQGMQQGMQQGIPQGMPPSIQPQNMQPGMAQSMSQSVAQ 2039
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGY-----------QPGFAPGYPQPSGYPVPVMQQPGPQAP--GGW 467
P MQ G QPG Q G +PG PG+ P QQ P P G
Sbjct: 1737 PAGFMQQGMQPGMQQGMPNTAVNAGQMQRPGMRPGWQMYQQNPQQQQQQQNPGVPNQGMQ 1796
Query: 468 MNMPQGLQQ 494
PQ QQ
Sbjct: 1797 QQFPQMNQQ 1805
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 34.3 bits (75), Expect = 0.092
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 348 GFQPGFQ-PGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 461
G PG + PG QPG + GY Q GYP P A G
Sbjct: 435 GCMPGLEIPGCQPGVSQGYQQEQGYPQGYSGYPSMAAGG 473
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 321 AQP-LPGMQH--GFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 458
AQP LP Q +QP +Q Y + YP PS YP P P P P
Sbjct: 502 AQPSLPNPQSTISYQP-YQSQYPYPYPYPYPYPSPYPYPAHYYP-PSLP 548
>SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 34.3 bits (75), Expect = 0.092
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 327 PLPGMQHGFQPGF-QPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 461
P+ G Q G PG+ Q G P PG P+ G P Q P P +PG
Sbjct: 39 PMMG-QFGMFPGWPQMGMPPPPGPGQPEMPGQPQVTPQTPSPASPG 83
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQ--PGYQPGFAPGYPQPSGYPVPV-MQQPGPQAPGG 464
P P M P F P PG P PQP P P MQ PGP P G
Sbjct: 1237 PPPAMPPDGPPKFMGLPPPPPGMRPMPPQPPFMPPPPRMQPPGPPGPPG 1285
>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
Length = 315
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQP 443
P+ + +QP QPGY+P + PGYP S P P
Sbjct: 46 PVYAKPNNYQPPPQPGYRPPY-PGYPPTSSSATPYPATP 83
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 363 FQPGYQPGFAPGYPQPSGY-PVPVMQQPGPQAPGGWMNMP 479
+QP QPG+ P YP GY P P P P G M MP
Sbjct: 54 YQPPPQPGYRPPYP---GYPPTSSSATPYPATPHG-MPMP 89
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 31.9 bits (69), Expect = 0.49
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 324 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG-GWMNMPQGLQQ 494
Q G Q+ P Q GY PGY +P V M Q G Q+ G+ QG QQ
Sbjct: 242 QGFTGKQYSQHP--QQGYNQPSNPGYQEPPTMNVGQMTQQGYQSDSQGYQQQNQGFQQ 297
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 31.5 bits (68), Expect = 0.65
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Frame = +3
Query: 324 QPLPGMQ----HGFQPGFQPGYQ--PGFAPGYPQPSGYPV--PVMQQPGPQAPGGWMNMP 479
QPLPG Q QP PG Q P + P G V P+ QP P PG +N P
Sbjct: 929 QPLPGNQVNPPMSSQPQPPPGNQVNPPMSSQPQPPPGNQVNPPMSSQPQP-PPGNQVNPP 987
Query: 480 QGLQQLP---SRLEYLSMIDQLIMHQKVELLEAFVGFETNNKYTV 605
Q P ++++ +D+L + EL E F + V
Sbjct: 988 MSSQPQPPPGNQVQLKEAVDELPDGIETELAEGGSNFSVGQRQLV 1032
>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 178 YSPNFPASHGYVPPPEGEKPNESYPIILKAAILAHHPLLCHTP 306
Y P + HG PPPE P E P++ +L + LL + P
Sbjct: 149 YPPEECSPHGECPPPEECSPGEHVPLLKNVPLLENVLLLENVP 191
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 372 GYQPGFAPGYPQPSGYPVPVMQQPGPQAP 458
GY PG P P G P+M PGPQ P
Sbjct: 612 GY-PGMPPRRPSHMGQQAPMMSSPGPQDP 639
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 31.1 bits (67), Expect = 0.86
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Frame = +3
Query: 336 GMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPG---------PQAPGGWMNMPQGL 488
GMQ G + G P PG PG+P + +PG QAPG PQ +
Sbjct: 132 GMQPGIRGGMMPQQGPGVRPGFPPAGSRQMAPGMRPGVPHQQMMMQQQAPGMGRGGPQMM 191
Query: 489 QQLP 500
Q P
Sbjct: 192 QLGP 195
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 327 PLPGMQH--GFQPGFQPGY----QPGFAPGYPQPSGYPVPVMQQPGPQAP 458
P PGM GF P PG PG P P P G P P M+QP P P
Sbjct: 253 PPPGMMPPPGFPPMGMPGMGGMPPPGMPPPMP-PGGMP-PNMEQPPPPPP 300
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVM-QQPGPQAPG 461
P PG G+ P GY P GYP GYP P GP PG
Sbjct: 32 PAPG---GYPPA-PGGYPPSGGYGYPPAGGYPPPQPGYAGGPPPPG 73
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFA--PGYPQPSGYPVPVMQQPGPQAPGGWMNMP 479
P P Q+G P QP P + PGY Q P P Q P G+ P
Sbjct: 81 PPPSGQYGAPPTSQPYGAPPTSGYPGYQQHPPPPQPSAQSYNAPPPAGYGQQP 133
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 354 QPGFQPGYQPGF-APGYPQPSGYPVPVMQQPGPQAPG 461
QPG+ PG +PG P P+G P GP A G
Sbjct: 993 QPGYPGAMTPGAPSPGVPSPTGLPPSGPPPTGPPADG 1029
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 321 AQPLPGMQHGFQPGFQPGYQPGFAP-GYPQPSGYPVPVMQQPG 446
AQP P + QP Q QPG+ P GYP YP QPG
Sbjct: 165 AQPYPQQGYPPQPPPQAYPQPGYPPQGYPPTGPYP---QTQPG 204
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/62 (41%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +3
Query: 327 PLPGMQ-HGFQPGFQPGY-QPGFAPGYPQPSGY----PVPVMQQPGPQAPGGWMNMPQGL 488
P PG Q +G PG Q GY P GY P G P P Q GP A PQG
Sbjct: 279 PPPGQQGYGPPPG-QQGYGPPPGQQGYGSPPGQQGYGPPPGQQGYGPPAGQQGYGPPQGQ 337
Query: 489 QQ 494
QQ
Sbjct: 338 QQ 339
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Frame = +3
Query: 336 GMQHGFQPGFQPGYQPGF-APGY--------PQPSGYP------VPVMQQPG---PQAPG 461
G QH +PG P QPGF +P QP G+P P QPG PQ PG
Sbjct: 549 GFQHQQRPGAPPTSQPGFPSPQMQEPMQLPTSQPGGFPPQQRPGAPPTSQPGGFPPQRPG 608
Query: 462 -GWMNMPQGLQQLPS 503
M+ P + PS
Sbjct: 609 MPPMSQPSSMHMQPS 623
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Frame = +3
Query: 327 PLPGMQHGFQ-PGFQPG-YQPGFAPGYP---QPSGYPVPVMQQPGPQAPGGWMNMPQGLQ 491
P P MQ Q P QPG + P PG P QP G+P P P P G
Sbjct: 567 PSPQMQEPMQLPTSQPGGFPPQQRPGAPPTSQPGGFPPQRPGMPPMSQPSSMHMQPSGQP 626
Query: 492 Q 494
Q
Sbjct: 627 Q 627
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +3
Query: 324 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQP---GPQAPGGWMNMPQGLQQ 494
Q PG QPG P +PG P QPS + QP PQ P + P QQ
Sbjct: 588 QQRPGAPPTSQPGGFPPQRPGMPP-MSQPSSMHMQPSGQPQSTAPQQPSQPLR-PHPHQQ 645
Query: 495 LPSRLEYL 518
+ S+++ L
Sbjct: 646 MNSQMQNL 653
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 142 ETELTMSHKPTPYSPNFPASHGYVPPPEGEKPNESYP 252
++ LT S KP+P + P+S G+V PP +P +P
Sbjct: 519 KSALTSSKKPSPLATKPPSSAGHVNPPP-SRPQTHHP 554
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 381 PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLP 500
PGF PG+P P G P+ G PG M QG+ Q P
Sbjct: 134 PGFPPGFPPPMGMPM----MSGQHMPG--MPPMQGMHQGP 167
>SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPG 398
PGM G PG G PG PG
Sbjct: 271 PGMDSGIDPGLDSGLDPGMNPG 292
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPG 398
PGM G PG G PG PG
Sbjct: 291 PGMDSGMDPGLDSGLDPGLDPG 312
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPG 398
PG+ G PG PG G PG
Sbjct: 231 PGLDSGLDPGIDPGMDSGMGPG 252
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 336 GMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPG 446
GM G PG G PG PG G + PG
Sbjct: 224 GMDSGMDPGLDSGLDPGIDPGMDSGMGPGMDSGMDPG 260
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPG 398
PG+ G PG PG G PG
Sbjct: 279 PGLDSGLDPGMNPGMDSGMDPG 300
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPG 398
PG+ G PG PG G PG
Sbjct: 299 PGLDSGLDPGLDPGMDSGIDPG 320
>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Frame = +3
Query: 357 PGFQ--PGYQ--PGFAPGYPQPSGYP-------VPVMQ-QPGPQAPGG 464
PGFQ PG PG APG P P GYP +P PGP P G
Sbjct: 273 PGFQGPPGLDGMPG-APGMPGPQGYPGGSGAPGIPGSPGMPGPPGPAG 319
>SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022)
Length = 236
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 166 KPTPYSPNFPASHGYVPPPEGEKPNESYP 252
+P P +P GY PP +G P + YP
Sbjct: 21 QPVTGQPGYPPQQGY-PPQQGYPPQQGYP 48
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 381 PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMP 479
PG G P G P P PGPQ P GW +P
Sbjct: 1815 PGNPAGPPGLDGPPGP----PGPQGPKGWPGVP 1843
>SB_38811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +3
Query: 324 QPLPGMQHGFQ--PGFQPGYQP--GFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQ 491
+P PG G+Q P P ++P G GY QP+ +P +Q P MN Q Q
Sbjct: 493 RPFPGNPQGYQQPPTNNPMFRPFPGNPQGYQQPTTNQLPTGRQQYP------MNSQQ--Q 544
Query: 492 QLPSRLEYLSMIDQLIMHQKVELLE 566
QL L+ +S + K +L E
Sbjct: 545 QLEQALKIISECVSKELGNKTKLAE 569
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQ-PGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQG 485
PG Q P PG P PG+ P G P + PG P G +N P G
Sbjct: 54 PGPQGPNGPKGPPGLPGPPGPPGFQGPPGNPAGAIGPPGLPGPNG-VNGPPG 104
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 357 PGFQPGYQPGFAPGY-PQPSGYPVPVMQQPGPQAP 458
P QP Y P AP Y P PS YP P+ P AP
Sbjct: 194 PPTQPSYPP-TAPSYPPTPSSYP-PIAASYPPTAP 226
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 357 PGFQPGYQPGFAPGYPQP--SGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSRLEY 515
P Q Y P ++P P SG P+ V+ PGPQ+P G Q +Q P ++Y
Sbjct: 169 PAQQYLYTPMYSPTQSAPTLSGSPLTVIP-PGPQSPNGVAPQVQTIQ--PFYIDY 220
>SB_7166| Best HMM Match : RBM1CTR (HMM E-Value=7.6)
Length = 147
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 405 QPS-GYPVPVMQQPGPQAPGGWMNMPQG 485
QP GYP P ++P P PG M M QG
Sbjct: 118 QPDEGYPGPSYREPPPPYPGQGMEMRQG 145
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQ 482
P P Q Q QP P PQ P+P QQ Q P M PQ
Sbjct: 864 PEPASQMNSQFNDQPNLAPYEPFARPQQPPAPMPPQQQSPYQPPAPTMQQPQ 915
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGP 449
P+ GM P PG+ G P P P G P P GP
Sbjct: 190 PMAGMPPPPPPPPPPGFPGGAPPPPPPPFGAPPPPALNGGP 230
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 354 QPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQ 452
Q G QPG P P P PV QQP Q
Sbjct: 2112 QQGMPVNIQPGPPPAPPPPPVQPVGAQQQPDDQ 2144
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 543 ALSVGQSWKGIPTSRAVAEGLAAYSSNHL 457
A S GQSW TSR + G ++Y S+++
Sbjct: 4107 ARSYGQSWSSYGTSRGYSGGWSSYRSSYV 4135
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +3
Query: 357 PGFQPGYQPGFAPGYPQPSGYPVPVMQQP-----GPQAPGGWMNMPQGLQQLPSR 506
PG G P YP P G+P P P GP P G P+ Q++PS+
Sbjct: 462 PGGMRGMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPPRGMPPPPR--QRMPSQ 514
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 324 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGP 449
QP+P + P QP P P P PS P+P ++P P
Sbjct: 1025 QPVPPKRKASPPSAQP-LPPPRKPS-PPPSAVPIPPPRKPSP 1064
>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1644
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 543 ALSVGQSWKGIPTSRAVAEGLAAYSSNHL 457
A S GQSW TSR + G ++Y S+++
Sbjct: 1453 ARSYGQSWSSYGTSRGYSGGWSSYRSSYV 1481
>SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Frame = +3
Query: 351 FQPGFQP----GYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSRLE 512
+QP P G P P Y Q GY P QP G P Q P+ ++
Sbjct: 180 YQPNAMPTPPQGVTPAPLPPYFQQQGYGYPQQPQPTQPVQPGQTQAPTAAQTTPAPVQ 237
>SB_37690| Best HMM Match : IgG_binding_B (HMM E-Value=4.2)
Length = 263
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQ--PGP 449
PG G PG PG PG APG P P PV +Q PGP
Sbjct: 16 PGPNKG-PPGPGPGPGPGPAPG-PGPIVQPVVPVQPVIPGP 54
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQ--PGP 449
PG G PG PG PG APG P P PV +Q PGP
Sbjct: 175 PGPNKG-PPGPGPGPGPGPAPG-PGPIVQPVVPVQPVIPGP 213
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Frame = +2
Query: 263 KRLSWPTTHSYATPRPTSWGTTPSG---HAAWVP 355
K + W H P W TTP G H W P
Sbjct: 277 KLVKWDYCHDTTPPATPPWPTTPPGCHFHGKWYP 310
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +3
Query: 324 QPLPGMQHGFQPGFQPGYQP--GFAPG-YPQPSGYPVPVMQQ---PGPQAPGGWMNMPQG 485
QP Q QP QPG QP F PG PQ P QQ PG Q ++ Q
Sbjct: 618 QPFRADQQTQQPFHQPGQQPQQSFRPGQQPQQPFRPEQQSQQSSRPGQQCQPQFLPDQQP 677
Query: 486 LQ 491
LQ
Sbjct: 678 LQ 679
>SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVM-QQPGPQAPGG 464
P+P Q +Q G G AP YPQ GY P+ PG GG
Sbjct: 144 PMPCAQGPYQAPL--GTYQGPAPPYPQLPGYGPPLQGDYPGGYVAGG 188
>SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)
Length = 1248
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 465 WMNMPQGLQQLPSRLEYLSM-IDQLIMHQKVELLEA 569
W N+P + LPS + +L DQ +M +K E +EA
Sbjct: 305 WANVPGHVSALPSSVSHLPHDDDQCVMAEKSESIEA 340
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 390 APGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSR 506
APGYP P P P M+ P P G M P + P R
Sbjct: 296 APGYPPPQYMPHPRMRPPTRIPPPG-MGPPPRIPPPPIR 333
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,519,542
Number of Sequences: 59808
Number of extensions: 452080
Number of successful extensions: 2013
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1918
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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