Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060823.seq
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 42 3e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 37 0.011
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 35 0.043
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.043
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 35 0.057
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 34 0.075
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 33 0.17
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 33 0.17
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.23
At1g54830.3 68414.m06253 CCAAT-box binding transcription factor ... 32 0.40
At1g54830.2 68414.m06252 CCAAT-box binding transcription factor ... 32 0.40
At1g54830.1 68414.m06251 CCAAT-box binding transcription factor ... 32 0.40
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 31 0.53
At1g08970.4 68414.m01000 CCAAT-box binding transcription factor ... 31 0.53
At1g08970.3 68414.m00999 CCAAT-box binding transcription factor ... 31 0.53
At1g08970.2 68414.m00998 CCAAT-box binding transcription factor ... 31 0.53
At1g08970.1 68414.m00997 CCAAT-box binding transcription factor ... 31 0.53
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 31 0.93
At4g08380.1 68417.m01384 proline-rich extensin-like family prote... 31 0.93
At5g67600.1 68418.m08524 expressed protein 30 1.2
At2g13550.1 68415.m01494 expressed protein 30 1.6
At5g44780.1 68418.m05488 expressed protein low similarity to SP|... 29 2.8
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 29 2.8
At4g20020.2 68417.m02930 expressed protein 29 2.8
At4g20020.1 68417.m02931 expressed protein 29 2.8
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 29 2.8
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 29 2.8
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 29 2.8
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 29 3.7
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 29 3.7
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 29 3.7
At4g37420.1 68417.m05297 hypothetical protein contains Pfam prof... 29 3.7
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 29 3.7
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 28 4.9
At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family... 28 4.9
At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family... 28 4.9
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b... 28 4.9
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 4.9
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 4.9
At2g34720.1 68415.m04264 CCAAT-binding transcription factor (CBF... 28 4.9
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ... 28 4.9
At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family... 28 4.9
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 28 6.5
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 28 6.5
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 28 6.5
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 28 6.5
At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family... 28 6.5
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 28 6.5
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 28 6.5
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 28 6.5
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 28 6.5
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 27 8.6
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont... 27 8.6
At5g01160.1 68418.m00020 e-cadherin binding protein-related cont... 27 8.6
At3g51150.1 68416.m05601 kinesin motor family protein contains P... 27 8.6
At2g27260.1 68415.m03276 expressed protein 27 8.6
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 27 8.6
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 342 QHGFQPGFQPGYQPGFAPGYPQPSGY 419
Q G+Q G+Q GYQPGF PGY GY
Sbjct: 158 QPGYQSGYQSGYQPGFTPGYQYQPGY 183
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPG--FAPGYPQPSGYPV 425
PG Q G+Q G+QPG+ PG + PGY YPV
Sbjct: 159 PGYQSGYQSGYQPGFTPGYQYQPGYSAGYQYPV 191
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPG-YPQPSGYPVPVMQQPGPQA--PGGWMNMPQGLQQ 494
P + +GFQP F PG +PG PG + P YP+ Q GP+ G N+ Q +QQ
Sbjct: 459 PSQPIGYGFQPQFMPGMRPGSGPGNFIVP--YPLQRQPQTGPRMGFRRGATNVQQHIQQ 515
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 342 QHGFQPGFQPGYQP--GFAP-GYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQ 494
QH GY P G+ P GYP P+GYP P Q G P G+ QG Q
Sbjct: 489 QHPVSAPPPQGYPPKEGYPPAGYPPPAGYPPPQYPQAG-YPPAGYPPPQQGYGQ 541
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KGYETELTMSHKPTPYS-PNFPASHGYVPPPEGEKPNESYP 252
K + +T K Y P P S PPP+G P E YP
Sbjct: 470 KPSDKSITEKKKKMSYQDPQHPVS---APPPQGYPPKEGYP 507
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFA-PGYPQPSGYPVPVMQQPGPQA--PGGWMNMPQGLQQ 494
P M +G+Q F PG +PG P + P +P+ QPGP+ G NM Q QQ
Sbjct: 463 PSQPMGYGYQVQFMPGMRPGAGPPNFMMP--FPLQRQTQPGPRVGFRRGANNMQQQFQQ 519
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 34.7 bits (76), Expect = 0.057
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Frame = +3
Query: 345 HGFQPG-FQPGYQPGFAP-GYPQPSGYP-----VPVMQQPG--PQAPGGWMNMPQG 485
HGF G P Q G+ P GYP GYP P PG P APGG+ P G
Sbjct: 17 HGFPGGGHYPPAQGGYPPQGYPPQQGYPPAGGYPPAGYPPGAYPAAPGGYPPAPGG 72
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +3
Query: 348 GFQPGFQPGYQPGFAP---GYPQPSGYPVPVMQQPGPQAPG 461
G+ PG P G+ P GYP P+GYP P G G
Sbjct: 53 GYPPGAYPAAPGGYPPAPGGYP-PAGYPAPGAHHSGHSGGG 92
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +3
Query: 357 PGFQPGYQPGFAPGYPQPSGYPVPVMQQ---PGPQAPGGW 467
PG+Q Y P P P P GYP P P PQ GG+
Sbjct: 14 PGYQSHYPPPGYPSAPPPPGYPSPPSHHEGYPPPQPYGGY 53
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLP 500
P+PG GF+ F PG PG P G+ +P P P +PGG +P G+ +P
Sbjct: 68 PIPGSP-GFRLPFPFPSSPGGNPGIPGSPGFRLPF---PFPSSPGGNPGIP-GIPGIP 120
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 348 GFQPGFQPGYQPGFAPGYPQPSGYP-VPVMQQPGPQAPGGWMNMP 479
G P +QP QPG P P +GYP + + PG P G + P
Sbjct: 102 GSMPQYQP--QPGMRPFQPMANGYPGIHGVAPPGAMPPHGLLRYP 144
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQ 491
P PG +G+Q PG +PG G P PS + +P M QP Q PGG P G+Q
Sbjct: 263 PQPG--YGYQQQLVPGMRPG---GGPVPSFF-MP-MVQPQQQRPGGG-RRPGGIQ 309
>At1g54830.3 68414.m06253 CCAAT-box binding transcription factor
Hap5a, putative similar to heme activated protein
GI:6289057 from (Arabidopsis thaliana) GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
similar to Transcription factor GB:CAA74053 GI:2398533
from [Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 217
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +3
Query: 348 GFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSR 506
G + GY G+ P P G P VM PG P +M P Q P +
Sbjct: 160 GAEAATAAGYPYGYLPPGTAPIGNPGMVMGNPGAYPPNPYMGQPMWQQPGPEQ 212
>At1g54830.2 68414.m06252 CCAAT-box binding transcription factor
Hap5a, putative similar to heme activated protein
GI:6289057 from (Arabidopsis thaliana) GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
similar to Transcription factor GB:CAA74053 GI:2398533
from [Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 217
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +3
Query: 348 GFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSR 506
G + GY G+ P P G P VM PG P +M P Q P +
Sbjct: 160 GAEAATAAGYPYGYLPPGTAPIGNPGMVMGNPGAYPPNPYMGQPMWQQPGPEQ 212
>At1g54830.1 68414.m06251 CCAAT-box binding transcription factor
Hap5a, putative similar to heme activated protein
GI:6289057 from (Arabidopsis thaliana) GI:14577940
CCAAT-binding protein subunit HAP5 {Hypocrea jecorina}
similar to Transcription factor GB:CAA74053 GI:2398533
from [Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 217
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +3
Query: 348 GFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSR 506
G + GY G+ P P G P VM PG P +M P Q P +
Sbjct: 160 GAEAATAAGYPYGYLPPGTAPIGNPGMVMGNPGAYPPNPYMGQPMWQQPGPEQ 212
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAPG-YPQPSGYP--VPVMQQPGPQAPGGWMNMPQGLQQLPS 503
P + G P F PG P FAPG P P Y P P A + P ++ PS
Sbjct: 67 PNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPS 126
>At1g08970.4 68414.m01000 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 GYQPGFAPGYPQPSGYPVPVMQQP-GPQAPGGWMNMPQGLQQLPSR 506
GY G+ P P G P VM P G P +M P QQ P +
Sbjct: 181 GYPYGYLPAGTAPIGNPGMVMGNPGGAYPPNPYMGQPMWQQQAPDQ 226
>At1g08970.3 68414.m00999 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 GYQPGFAPGYPQPSGYPVPVMQQP-GPQAPGGWMNMPQGLQQLPSR 506
GY G+ P P G P VM P G P +M P QQ P +
Sbjct: 181 GYPYGYLPAGTAPIGNPGMVMGNPGGAYPPNPYMGQPMWQQQAPDQ 226
>At1g08970.2 68414.m00998 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 GYQPGFAPGYPQPSGYPVPVMQQP-GPQAPGGWMNMPQGLQQLPSR 506
GY G+ P P G P VM P G P +M P QQ P +
Sbjct: 181 GYPYGYLPAGTAPIGNPGMVMGNPGGAYPPNPYMGQPMWQQQAPDQ 226
>At1g08970.1 68414.m00997 CCAAT-box binding transcription factor
Hap5a, putative
Length = 231
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 GYQPGFAPGYPQPSGYPVPVMQQP-GPQAPGGWMNMPQGLQQLPSR 506
GY G+ P P G P VM P G P +M P QQ P +
Sbjct: 181 GYPYGYLPAGTAPIGNPGMVMGNPGGAYPPNPYMGQPMWQQQAPDQ 226
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +3
Query: 345 HGFQPGFQPGYQPGFAP--GYPQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLP 500
HG+ P P PG P GYPQ P P P PG + P G P
Sbjct: 14 HGYPPAGYP--PPGAYPPAGYPQQGYPPPPGAYPPAGYPPGAYPPAPGGYPPAP 65
>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 437
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 163 HKPTPYSPNFPASHGYVPPPEGEKPNESY 249
+KP PY + P + Y PPP P+ SY
Sbjct: 399 YKPPPYVYSSPPPYVYNPPPSSPPPSPSY 427
>At5g67600.1 68418.m08524 expressed protein
Length = 82
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 348 GFQP-GFQP-GYQP-GFAPGYPQPSGYPVPVMQQPGPQAPGGWM 470
G+ P G+ P GY P G+A GYP GYP P Q Q M
Sbjct: 22 GYPPAGYPPAGYPPPGYAQGYP-AQGYPPPQYSQAPQQKQNAGM 64
>At2g13550.1 68415.m01494 expressed protein
Length = 181
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 142 ETELTMSHKPTPYSPNFPASHGYVPPPEGEKPNESYP 252
+T L H PT + PN PP P+ES P
Sbjct: 7 QTPLARMHLPTQFQPNTRTGRQPKSPPNSHHPDESSP 43
>At5g44780.1 68418.m05488 expressed protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 723
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQ-PGPQAPGGWMNMPQGLQQ 494
PLPG Q G QP YQ GF+ G G PVP Q PG ++N QG Q
Sbjct: 464 PLPGQG---QEG-QPSYQMGFSQGL----GAPVPPNQVIPGNYGQWAFVNYNQGPPQ 512
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 351 FQPGFQPGYQPGFAPGY-PQPSGYPVPVMQQPGPQAPG 461
F P PGY P +PGY P GY P P +PG
Sbjct: 1537 FSPSSSPGYSPS-SPGYSPTSPGYS-PTSPGYSPTSPG 1572
>At4g20020.2 68417.m02930 expressed protein
Length = 406
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Frame = +3
Query: 333 PGMQHGFQ--PGFQPGYQPG-------FAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQG 485
PG G Q P FQ GY G + GY Q G PVP Q Q G + QG
Sbjct: 245 PGQGQGTQAPPPFQGGYNQGPRSPPPPYQAGYNQGQGSPVPPYQAGYNQVQGSPVPPYQG 304
Query: 486 LQ 491
Q
Sbjct: 305 TQ 306
>At4g20020.1 68417.m02931 expressed protein
Length = 419
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Frame = +3
Query: 333 PGMQHGFQ--PGFQPGYQPG-------FAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQG 485
PG G Q P FQ GY G + GY Q G PVP Q Q G + QG
Sbjct: 245 PGQGQGTQAPPPFQGGYNQGPRSPPPPYQAGYNQGQGSPVPPYQAGYNQVQGSPVPPYQG 304
Query: 486 LQ 491
Q
Sbjct: 305 TQ 306
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQ--PGPQAPGG--WMNMPQGLQQ 494
P PG Q Q Y P P YPQ P QQ PG Q P +M+ P Q
Sbjct: 527 PYPGNQPQMMYHPQAYYHPNGQPQYPQQQMIPGQQQQQMIPGQQHPRPVYYMHPPPYPQD 586
Query: 495 LP 500
+P
Sbjct: 587 MP 588
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 145 TELTMSHKPTPYSPNFPASHGYVPPPEGEKPNESYPIILKAAILAHHPLL 294
TELT + KPTP S P H + P + +P Y + +++ A LL
Sbjct: 300 TELTWASKPTPVSE--PVRHSELVPWQYSEPARQYQLSSRSSEAAQLSLL 347
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +3
Query: 321 AQPLPGMQHGFQP---GFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGW-MNMPQGL 488
A P G G+ P G PGY P GYPQ GYP PQ P G+ G
Sbjct: 220 AYPQQGGYPGYPPQQQGGYPGYPPQGPYGYPQ-QGYP--------PQGPYGYPQQQAHGK 270
Query: 489 QQLPSR 506
Q P +
Sbjct: 271 PQKPKK 276
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 399 YPQPSGYPVPVMQQPGP-QAPGGWMNMPQGLQQLPSRLEY 515
YP P YP P+ + P P Q P P +++ P EY
Sbjct: 179 YPPPEKYPPPIKKYPPPEQYPPPIKKYPPPIKKYPPPEEY 218
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 375 YQPGFAPGYPQPSGYPVPVMQQPGPQ 452
Y P F YP P YP P+ + P P+
Sbjct: 133 YSPPFKK-YPPPEQYPPPIKKYPPPE 157
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/58 (37%), Positives = 28/58 (48%)
Frame = +2
Query: 155 QCHINQHHTHQISLQVMDMYLHQKEKSQMKVTPSSSKRLSWPTTHSYATPRPTSWGTT 328
Q H + HH HQ Q MY Q + SQ TPSSS L PT + + ++ TT
Sbjct: 157 QQHNHHHHHHQQQQQHQQMYF-QPQSSQRN-TPSSSP-LPSPTPANAKSSSSFTFHTT 211
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/46 (41%), Positives = 20/46 (43%)
Frame = +3
Query: 324 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 461
QP P +QH GY P P YPQ S P P Q P PG
Sbjct: 340 QPPPQLQH------PSGYNPE-EPPYPQQSYPPNPPRQPPSHPPPG 378
>At4g37420.1 68417.m05297 hypothetical protein contains Pfam profile
PF01697: Domain of unknown function
Length = 588
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/80 (26%), Positives = 32/80 (40%)
Frame = +1
Query: 136 GYETELTMSHKPTPYSPNFPASHGYVPPPEGEKPNESYPIILKAAILAHHPLLCHTPAYI 315
G+E + +S + P FP + P GEK + IL + A C P
Sbjct: 113 GWEILVIVSPEEKAKPPPFPGENYICFYPNGEKSTARFAAILPFSNRA--SFRCSLPGIY 170
Query: 316 LGHNPFRACSMGSSQDFNLA 375
H+P + SS+ F L+
Sbjct: 171 RHHHPIPTPILASSKRFQLS 190
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 163 HKPTPYSPNFPASHGYVPPPEGEKP 237
H P PY P Y PPPE +P
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQP 424
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = +3
Query: 321 AQPLPGMQHGF-QPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 458
+ P PG PG P P P P PS P + PGP P
Sbjct: 236 SSPTPGPDSPLPSPGPPPSPSPTPGPDSPLPSPGPDSPLPSPGPDPP 282
>At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 199
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAP-GYPQPSGYPVPVMQQPGPQA 455
P + + Q G+ P P P GYP PSGYP Q P P A
Sbjct: 146 PAVGYPPQQGYPPSGYPQHPPQGYP-PSGYP----QNPPPSA 182
>At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 255
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGYQPGFAP-GYPQPSGYPVPVMQQPGPQA 455
P + + Q G+ P P P GYP PSGYP Q P P A
Sbjct: 202 PAVGYPPQQGYPPSGYPQHPPQGYP-PSGYP----QNPPPSA 238
>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
boundaries domain protein 18 (LBD18) identical to LOB
DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
by full-length cDNA gi:17227163
Length = 262
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 402 PQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSRLEYLSMIDQ 533
PQP P P+ P P P ++P + LPS + S+ DQ
Sbjct: 150 PQPMPQPQPLFFTPPP--PLAITDLPASVSPLPSTYDLASIFDQ 191
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 145 TELTMSHKPTPYSPNF-PASHGYVPPPEGEKPNESYPIILKAAILAHHPLLCHTPA 309
T T SH PTP++P+ P H PP P S+P HP H P+
Sbjct: 81 TPSTPSHTPTPHTPSHTPTPH--TPPCNCGSP-PSHPSTPSHPSTPSHPTPSHPPS 133
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 145 TELTMSHKPTPYSPNF-PASHGYVPPPEGEKPNESYPIILKAAILAHHPLLCHTPA 309
T T SH PTP++P+ P H PP P S+P HP H P+
Sbjct: 81 TPSTPSHTPTPHTPSHTPTPH--TPPCNCGSP-PSHPSTPSHPSTPSHPTPSHPPS 133
>At2g34720.1 68415.m04264 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 198
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3
Query: 339 MQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPG 461
M HG P P Y+ FA P YP +Q G Q PG
Sbjct: 48 MAHGLYPYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPG 88
>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
GYF domain-containing protein contains Pfam domains
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF02213: GYF domain
Length = 659
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 393 PGYPQPSGYPVPVMQQPGPQAPGGW-MNM 476
PG+P + V V QP QA W MNM
Sbjct: 441 PGFPPSDSWKVAVPSQPNAQAQAQWGMNM 469
>At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family
protein
Length = 846
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +3
Query: 354 QPGFQ-PGYQPGFAPGYPQPSG-----YPVPVMQQPGPQAPGGWMNMPQGLQQLP 500
+PG+ P Y P P Y P G YP QQP P G PQG Q P
Sbjct: 774 RPGYSIPPYGP--PPPYHTPHGQAPQPYPPQAQQQPHPSWQQGSYYDPQGQQPRP 826
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPG-PQAP 458
P GM G P P PG P P G P+ PG P AP
Sbjct: 202 PPGGMMRGPPPPHGMQGPPPSRPGMPPPGGAPMFAPPHPGMPPAP 246
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 327 PLPGMQHGF-QPG-FQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAPGGWMNMPQGL 488
PL G F QPG F PG P P PSG P P PG M P G+
Sbjct: 133 PLVGGGSSFPQPGGFPASGPPGGVPSGP-PSGARPIGFGSPPPMGPGMSMPPPSGM 187
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 127 YEKGYETELTMSHKPTPYSPNFPASHGYVPPPE---GEKPNESYPIILKAAILAH 282
+ + +ET + + P+ Y N SH VPPP P+ SY L A +H
Sbjct: 254 FPRYHETSSSRNPTPSVYQRNHYISHHPVPPPPIVYPHMPSASYAETLHPASYSH 308
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +3
Query: 336 GMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVM-QQPGPQAPG 461
GM G+ G Q PG PGY +GY QQPG G
Sbjct: 396 GMPSGY--GTQANISPGVYPGYGAQAGYQGGYQTQQPGQGGAG 436
>At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family
protein contains QXW lectin repeat domain, Pfam:PF00652
Length = 317
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 130 EKGYETELTMSHKPTPY--SPNFPASHGYVPPPEGEKPNESYP 252
E +E ++ PY +P P S G+V + PNESYP
Sbjct: 62 ETQFEPHAPPPYRSEPYFETPAPPPSFGHVSHVGHQSPNESYP 104
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Frame = +3
Query: 369 PGYQPGFAPGYP--QPSGY 419
P Y PG+ PGYP P+GY
Sbjct: 159 PVYPPGYPPGYPFSYPTGY 177
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 357 PGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 458
P P Y P P P Y +PV Q P P +P
Sbjct: 690 PPPSPVYYPPVTQSPPPPPVYYLPVTQSPPPPSP 723
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 345 HGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGP 449
HG+ PG Y P YP P GYP P P P
Sbjct: 22 HGYPPG---AYPPPPQGAYPPPGGYP-PQGYPPPP 52
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +3
Query: 324 QPLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPG 446
Q P HG+ P P PG YP P+GYP P +PG
Sbjct: 46 QGYPPPPHGYPPAAYPP-PPG---AYP-PAGYPGPSGPRPG 81
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187;
contains Pfam profile PF02845: CUE domain
Length = 1973
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGP 449
P P + H QP QP P P P P P P P
Sbjct: 847 PPPPLGHSLPSVLQPPLQPQSQPPEPPPEMMPPPPQALPPP 887
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +3
Query: 327 PLPGMQHGFQPGFQPGYQPGFAPGYPQPSGYPVPVMQQPGPQAP 458
P H P F P +QP P P P +P P P P P
Sbjct: 37 PFSPPHHPPPPHFSPPHQP---PPSPYPHPHPPPPSPYPHPHQP 77
>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1501
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 402 PQPSGYPVPVMQQPGPQAPGGWMNMPQGLQQLPSRLEYLSM 524
P S Y V+Q+P Q G+M+ GLQ +P+ L M
Sbjct: 84 PMRSEYSRSVLQEP-QQPTNGYMHGNLGLQTMPNEANVLGM 123
>At5g01160.1 68418.m00020 e-cadherin binding protein-related
contains weak similarity to E-cadherin binding protein
E7 [Mus musculus GP|9622093|gb|AAF89617
Length = 360
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Frame = +3
Query: 333 PGMQHGFQPGFQPGY-QPGFA-PGYPQPSGY------PVPVMQQPGPQAPGGWMNMP 479
P + PGF+ +PG P YPQP PVP+ Q PG G+ + P
Sbjct: 215 PDSDNSRPPGFETASPKPGIRFPDYPQPMNLMQPPSLPVPMNQNPGLPQQFGFPSYP 271
>At3g51150.1 68416.m05601 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1025
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 218 HQKEKSQMKVTPSSSKRLSWPTTHSYATPRPTSWGTTPSGHAAWVPA 358
+Q E+++ + PS+SKR P H P +W H +PA
Sbjct: 710 YQNERAESNLKPSNSKRPPLP-KHISRMSMPATWFEKDFNHTQRMPA 755
>At2g27260.1 68415.m03276 expressed protein
Length = 243
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 390 APGYPQPSGYPVPVMQQP 443
A GYP P YP P QQP
Sbjct: 8 ATGYPYPYPYPNPQQQQP 25
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 291 EWVVGQDSRFEDDGVTFIWLFSFWWRY 211
E V+G+ S E +G +W+ WWRY
Sbjct: 332 EDVIGRTS--ETEGTRALWISKRWWRY 356
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,261,549
Number of Sequences: 28952
Number of extensions: 314400
Number of successful extensions: 1478
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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