Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060822.seq
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7YU13 Cluster: LD26355p; n=3; Diptera|Rep: LD26355p - ...    36   1.3  
UniRef50_Q6F794 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_Q6A022 Cluster: MKIAA0668 protein; n=4; Theria|Rep: MKI...    33   8.8  

>UniRef50_Q7YU13 Cluster: LD26355p; n=3; Diptera|Rep: LD26355p -
            Drosophila melanogaster (Fruit fly)
          Length = 1654

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +3

Query: 132  LPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQ 248
            +P  Q  AQL TTVP+P  + Q+P  P  N  AVQ  +Q
Sbjct: 1497 VPRRQKHAQLATTVPIPPSLAQSPRAP-SNLEAVQLQQQ 1534


>UniRef50_Q6F794 Cluster: Putative uncharacterized protein; n=1;
           Acinetobacter sp. ADP1|Rep: Putative uncharacterized
           protein - Acinetobacter sp. (strain ADP1)
          Length = 131

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 135 PAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQN 251
           P   + A L    P  HD PQ P  P + A   QP  QN
Sbjct: 77  PMAPADAPLAPPAPAAHDAPQPPHDPVQQAAPAQPQDQN 115


>UniRef50_Q6A022 Cluster: MKIAA0668 protein; n=4; Theria|Rep:
           MKIAA0668 protein - Mus musculus (Mouse)
          Length = 694

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = -3

Query: 285 LSSVLVSTAEVCFVS*AELLLRFLQVYLELEGYHEERVL*FPVGLQTVQPAMLCTWQISV 106
           L  V V T    F    +  L FL + L L G        +P+GLQT+QPA++  W    
Sbjct: 227 LLDVFVLTRSRHFSLNLKSFLWFLLLLLLLTGLTYGAWHFYPLGLQTLQPAVVSWWAAKE 286

Query: 105 NRRTP 91
           +R+ P
Sbjct: 287 SRKQP 291


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,924,596
Number of Sequences: 1657284
Number of extensions: 9612656
Number of successful extensions: 27848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27831
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)