Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060822.seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   4.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.5  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   7.8  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   7.8  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 185 MRNGYCSSQLGSRLFSRQCYAHG 117
           ++ G C +Q+GS+ + + C  HG
Sbjct: 8   LQAGQCGNQIGSQFWQQLCLEHG 30


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 514 STEAKKEDATTPKSELAKSTEAPTHMEPTVQ 606
           S +  K+D TTPK  L + T +P      +Q
Sbjct: 179 SPKKSKDDITTPKKRLMEDTYSPRESPSKIQ 209


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 508 SSSTEAKKEDATTPKSELAKSTEAPTHMEPTVQGKSI*WT----KLCWW 642
           S   +AK E A    ++   STE+PT+   T QG S+  +    K+C W
Sbjct: 276 SMMAKAKAEAALPVGTKEMVSTESPTYKALTKQGYSVVGSHSGVKICRW 324


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 133 CRLN-SLEPNWELQYPFLMISLKLQVNLKKTQQQF 234
           CRLN S +PN ++ +   ++ L  + ++KK +Q F
Sbjct: 190 CRLNHSCDPNCQIIFDGAIVQLVSKRDIKKDEQLF 224


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 46  CLFLLKISFISK*RSWRSSVY*NLPCA*HCRLNSLEPNWELQYPFLMISLK 198
           C F L I ++   R+   S++ +LP      LN L+ + +L  P+  +S+K
Sbjct: 81  CFFCLLIDYLGGERAAVISLHGHLPRPRLWPLNYLQDDIDLSDPYTFLSIK 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,181
Number of Sequences: 5004
Number of extensions: 41195
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)