Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060822.seq
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0103 - 13425411-13425713,13425874-13425974,13426410-134264...    29   2.7  
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     28   6.2  
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341...    28   8.1  

>07_03_0103 -
           13425411-13425713,13425874-13425974,13426410-13426471,
           13426951-13427123
          Length = 212

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 514 STEAKKEDATTPKSELAKSTEAPTHMEPTVQGKSI 618
           ST A++  A +P+SE   ++ A TH +P  +G +I
Sbjct: 108 STRAEESLALSPRSETVLNSSATTHTDPYSEGLAI 142


>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 339 DADTGVASVTFSASGFTFLSSVLVSTAEVCF 247
           DAD GVA+V  +  G  F S V ++ AE  F
Sbjct: 53  DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83


>01_06_0646 -
           30832201-30832838,30833643-30833838,30833975-30834126,
           30834258-30834303,30834992-30835216,30835374-30835414,
           30835705-30835834,30835951-30836019,30836254-30836307,
           30836389-30836547,30836854-30836991,30837079-30837141,
           30837225-30837264,30837369-30837415,30838062-30838373
          Length = 769

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 126 IALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAV 233
           I LP E+  A LG  V   HD P APG   +    V
Sbjct: 5   IILPKEEEAA-LGVAVEEDHDSPAAPGYQHQQGPPV 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,671,102
Number of Sequences: 37544
Number of extensions: 265474
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)