Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060822.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     31   0.67 
SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  29   4.8  
SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  29   4.8  

>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 171 VPVPHDIPQAPGKPEENATAVQPTKQNTLL 260
           +P PH I QA G+PE  AT      Q+ LL
Sbjct: 371 IPTPHGITQAQGRPENTATPHTTRGQSPLL 400


>SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 276

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 135 PAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQNTLLQ 263
           P       +G TVP+P  +P  P  P        P+  N LLQ
Sbjct: 49  PCNHQLLMVGPTVPIPPTLPPPPPPPPPPLPPPPPSGGNILLQ 91


>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 500

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 135 PAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQNTLLQ 263
           P       +G TVP+P  +P  P  P        P+  N LLQ
Sbjct: 273 PCNHQLLMVGPTVPIPPTLPPPPPPPPPPLPPPPPSGGNILLQ 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,246,193
Number of Sequences: 59808
Number of extensions: 304127
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)