Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060822.seq
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 455 PTKIVPEHQTEAAKKSETARQLKPK 529
           P  +VPE+Q    +K E A++ K K
Sbjct: 254 PECVVPEYQCAVKRKEEKAQKEKDK 278


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 4   HEALSTENKSHLFNCLFLLKI 66
           H  L    ++HL NCL  LK+
Sbjct: 53  HNELEKNRRAHLRNCLEKLKV 73


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 676 PIAKRPRVRMIPTNKA-WSIKCSCPVQLVPCVWG 578
           P A RPR  +  T+    + +  C V+ +PC WG
Sbjct: 519 PSACRPRHEIRSTDVIPGTQEHVCGVKGIPCSWG 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,602
Number of Sequences: 438
Number of extensions: 2568
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)