Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060821.seq
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   6.4  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   6.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.4  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 103 VSTFNKRKCYDAARSTSRRCTGV---RASPSASSQQLKRPKYLHPYTQP 240
           VS   KR+  D  ++ S   +G     +SPS+ + Q  +  Y  P TQP
Sbjct: 39  VSQIVKREPMDEDKNDSGVTSGSDFHSSSPSSDTSQDLQHSYQSPQTQP 87


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 283 CYLIVGDQSSGWFSLVACKGASIL 212
           CY ++G  S G+   +AC G  IL
Sbjct: 513 CYFMIGLNSQGFRFYIAC-GIMIL 535


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 320 DVTTPSFPDSVSE 358
           DV TPS P S+SE
Sbjct: 59  DVPTPSSPRSISE 71


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 571 VAAAFLGASPVISNLNSFCPA 509
           +A    GA+P +S    F PA
Sbjct: 376 IATTTKGAAPAVSKARQFLPA 396


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 571 VAAAFLGASPVISNLNSFCPA 509
           +A    GA+P +S    F PA
Sbjct: 201 IATTTKGAAPAVSKARQFLPA 221


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 283 CYLIVGDQSSGWFSLVACKGASIL 212
           CY ++G  S G+   +AC G  IL
Sbjct: 513 CYFMIGLNSHGFRFYIAC-GIMIL 535


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,076
Number of Sequences: 336
Number of extensions: 3161
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)