Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060821.seq
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 46 5e-06
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 32 0.079
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.7
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 2.2
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 3.9
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 26 3.9
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 5.2
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 26 5.2
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 6.8
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 9.0
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 9.0
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 379 ESGRQRXADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETVKLDK 519
+ G DE + +ETDK PV AP GV+KE VK+G+T+ +D+
Sbjct: 65 QPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQ 111
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 31.9 bits (69), Expect = 0.079
Identities = 11/48 (22%), Positives = 28/48 (58%)
Frame = +1
Query: 379 ESGRQRXADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETVKLDKS 522
+ G + +++LE+ETDK + V +G++ ++ ++ G + + K+
Sbjct: 58 KEGDSFKSGDILLEVETDKATMDVEVQDNGILAKVLIEKGSNIPVGKN 105
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 197 NNSNAQNTCTLTRNQTEPTGALVAHNQVAS 286
NNS N+ T++ NQ PT A A +++ S
Sbjct: 391 NNSEWNNSMTMSSNQETPTAASCAVSRIGS 420
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 182 HPLQVNNSNAQNTCTLTRNQTEPTGALVAHNQVASIHFTNPLLVEQDVTTPSFPDSVS 355
HP NN+++ T ++ E A + N V S PL V+ +V + +S
Sbjct: 351 HPSTNNNASSYQNFNETSDEGEDNDATIRANNVRSSFLEAPLPVQPNVQAETVTPKIS 408
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 273 LWATRAPVGSVWLRVRVQVFWAFELLT*SGW 181
L+ T P ++W +++ AF +L GW
Sbjct: 56 LFQTPLPNANIWSNQAIRILMAFNILANGGW 86
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 228 LHATKLNQPELWSPTIK*HPS 290
+H K N+ E WS IK HPS
Sbjct: 82 IHLEKSNKMEWWSCVIKGHPS 102
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 5.2
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +2
Query: 305 LLVEQDVTTPSFPDSVSEGDVKLDKKVGDSVXPMKWSWKSRRTKPPFRSWRPAMVSSRSC 484
+++ QD+ P+FPDS E D VG S+ + +K+ + K ++S A VSS
Sbjct: 318 IMLPQDID-PTFPDSEPEDDGHASSTVG-SLSKEEARFKA-KAKWNYKSSFSAHVSSEVL 374
Query: 485 TSKTEKPL 508
+ PL
Sbjct: 375 RNSKSPPL 382
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 139 ARSTSRRCTGVRASPSASSQQLKRPKYLHP-YTQPN 243
A +S T ASP+ +Q +P Y P Y+QP+
Sbjct: 71 AGGSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPS 106
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 5.2
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 188 LQVNNSNAQNTCTLTRNQTEPTGALVAHNQVASIHFTNPLLVEQDVTTPSFPDSVSEGDV 367
L + S +++ L RN + + AL + +H L + + TP +PD
Sbjct: 621 LPFDPSTSRDASVLLRNLSAKSSALEKDTRRVVLHALLGLTITR--FTPLWPDLSRTAAS 678
Query: 368 KLDKKVGDSVXPMKWSWKSRRTKP 439
+ K+V D + +SW S + P
Sbjct: 679 IVTKEVEDEFLAIIYSWLSLPSPP 702
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 485 YNSLMTPWPGAMTGMAVLSVSISRTTSSAXRCL 387
YN P+ GA+ + +S SI+R TS A L
Sbjct: 197 YNFNDRPFTGALASLFTVSSSINRATSGALNFL 229
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 6.8
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = +2
Query: 59 VKSIITTKRQRQNKR*VRSISENATTLLEAHPDAVPAS-GPVHPLQVNNSNAQNTCTLTR 235
V + +T + K+ + + +++ LE P + P H L N+ NAQ +
Sbjct: 67 VNGVNSTTIKENTKKEISNPNDSTRLPLEQIPGSNNLFLDPRHQLGDNSQNAQRHHEPSF 126
Query: 236 NQTEPTGALVAHNQVASIHFTNPLLVEQDVTTPSFPDSVS 355
N + + + VA +P +PSFP S S
Sbjct: 127 NSEKASYTSTPYKNVAPKVIDSPSARHMHSNSPSFPPSQS 166
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 119 SENATTLLEAHPDAVPASGPVHP 187
S+ A L+E + DAVPAS P
Sbjct: 924 SDKAPDLIELNRDAVPASADTEP 946
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/52 (21%), Positives = 24/52 (46%)
Frame = +2
Query: 176 PVHPLQVNNSNAQNTCTLTRNQTEPTGALVAHNQVASIHFTNPLLVEQDVTT 331
P+H NNS +Q + P+ + H ++ HF + E+++++
Sbjct: 382 PIHSSVDNNSFSQRDFDSPNSINPPSPLMSNHESASTEHFNSTTTTEKELSS 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,389
Number of Sequences: 5004
Number of extensions: 51960
Number of successful extensions: 155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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