Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060821.seq
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 39 0.003
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494... 33 0.14
04_03_0151 + 11905926-11906618 31 0.75
09_02_0338 + 7426999-7428322,7428390-7428646 29 2.3
03_02_0816 + 11487811-11488708,11488835-11489235 29 3.0
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 29 4.0
05_03_0531 - 15073952-15074017,15075883-15076073,15076173-15076239 28 7.0
11_06_0702 + 26432798-26432890,26434021-26434416 27 9.3
11_06_0206 + 21201030-21201422 27 9.3
05_03_0515 + 14930736-14932697 27 9.3
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 27 9.3
04_01_0208 + 2596110-2596928 27 9.3
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 385 GRQRXADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETV 507
G + ADE + +IETDK I V +P GVI++ +G+TV
Sbjct: 98 GDRVEADEPIAQIETDKVTIDVASPEAGVIEKFIASEGDTV 138
>02_03_0404 +
18648632-18648669,18649319-18649379,18649449-18649476,
18649787-18649861,18649929-18649984,18650085-18650129,
18650224-18650475,18650586-18650680,18651114-18651204,
18651356-18651466,18651556-18651750,18651827-18652018
Length = 412
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 385 GRQRXADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETV 507
G + ADE + +IETDK + V +P G+I++ +G V
Sbjct: 70 GDRVEADEPIAQIETDKVTMDVASPEAGIIEKFVASEGGIV 110
>04_03_0151 + 11905926-11906618
Length = 230
Score = 31.1 bits (67), Expect = 0.75
Identities = 25/72 (34%), Positives = 33/72 (45%)
Frame = +2
Query: 122 ENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTGALVAHNQVASIHFTN 301
+ +TLL HP +S P HP V++SNA + R P G N AS F
Sbjct: 148 QRGSTLLRQHPRQA-SSAPGHPAVVSSSNAPRIAPIQR----PIGKSPLGNP-ASKKFLP 201
Query: 302 PLLVEQDVTTPS 337
V++ VT PS
Sbjct: 202 AAAVKRVVTPPS 213
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 411 HFIGXTLSPTFLSNLTSPSETESGKLGVVTSCSTSRGFVKWMDAT 277
H + L PT + S T+ VV SC+++ GF +W AT
Sbjct: 220 HLLHTRLQPT--AEWGSEKPTKGAAAHVVVSCASTPGFYRWRPAT 262
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 175 ASPSASSQQLKRPKYLHPYTQPN*TNRSSGRPQSSSIHPLHESPAC 312
A+ S SSQ + +HP P RS P+S +I P H +C
Sbjct: 74 ATYSPSSQGQPPQQQMHPAPTPVRRRRSCDAPRSPTIAPEHRRASC 119
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 149 HPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTGALVA 268
H DA+P +G + LQ A N T +P G+LVA
Sbjct: 260 HIDALPPAGSIVSLQYFLGQAHNKLVETARIYDPNGSLVA 299
>05_03_0531 - 15073952-15074017,15075883-15076073,15076173-15076239
Length = 107
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 220 LHPYTQPN*TNRSSGRPQSSSIHPLHESPACRARCDH 330
+HP P+ +N+ G P+ ++ H S RARC H
Sbjct: 5 VHPLLVPHSSNQPIGHPRGFALSRAHPS---RARCSH 38
>11_06_0702 + 26432798-26432890,26434021-26434416
Length = 162
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 399 RR*SGPGNRDGQNRHSGHGARPW 467
RR G G+ G+N HG RPW
Sbjct: 98 RRGEGAGHGRGRNGDGKHGRRPW 120
>11_06_0206 + 21201030-21201422
Length = 130
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 381 KWETAXRR*SGPGNRDGQNRHSGHGARPWCH---QGVV 485
+WE RR G N+ G N G G R H QGVV
Sbjct: 84 RWELRRRRDDGRQNKHGSNGRRGQGHRGRHHVRGQGVV 121
>05_03_0515 + 14930736-14932697
Length = 653
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 77 TKRQRQNKR*VRSISENATTLLEAHPDAVPASGPV 181
T+ +R R+ISE LL HP+ +P SG V
Sbjct: 475 TRERRHLMDACRTISEYMCYLLVVHPEMLPVSGSV 509
>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 110 RSISENATTLLEAHPDAVPASGPVHPLQVNN 202
R + + + L HP A PA+GP+H + +NN
Sbjct: 1625 REMEDKESRKLVYHP-ATPAAGPLHGVALNN 1654
>04_01_0208 + 2596110-2596928
Length = 272
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 408 SGPGNRDGQNRHSGHGARPWCHQGV 482
+G G GQN H +G RPW G+
Sbjct: 241 AGAGLGRGQNGHGNNGRRPWKAAGL 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,888
Number of Sequences: 37544
Number of extensions: 364617
Number of successful extensions: 1053
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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