Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060821.seq
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 7e-08
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 30 1.3
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_31700| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=6.8) 29 3.1
SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14) 28 7.2
SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75) 28 7.2
SB_40757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 27 9.5
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 27 9.5
SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2) 27 9.5
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 27 9.5
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 9.5
SB_26636| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 27 9.5
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 27 9.5
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_56069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15) 27 9.5
SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13) 27 9.5
SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15) 27 9.5
SB_23420| Best HMM Match : rve (HMM E-Value=2.7e-11) 27 9.5
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 403 DEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETVK 510
DEVV EIETDKT+IPV AP +GVI+EL+V DG+ V+
Sbjct: 77 DEVVGEIETDKTSIPVTAPANGVIEELFVADGDKVE 112
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 323 VTTPSFPDSVSEGDVKLDKKVGDSV 397
V TP F +SV+EGD++ D+ VGD+V
Sbjct: 50 VNTPPFAESVTEGDIRWDQAVGDAV 74
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +2
Query: 263 VAHNQVASIHFTNPLLVEQDVTTPSF-----PDSVSEGD-VKLDKKVGDSVXPMKWSWKS 424
VA N+V T +LV++ + P F P V EGD V+ D ++ P K W
Sbjct: 100 VATNEVGQATITTEVLVKETLRKPEFKQKMQPLQVLEGDEVRFDVRIDGKPTP-KVEWFK 158
Query: 425 RRTK 436
RTK
Sbjct: 159 NRTK 162
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 420 FQDHFIGXTLSPTFLSNLTSPSETESGKLGVVTSCST 310
FQ H + + TF S+L +P +T + + +VT C T
Sbjct: 678 FQSHLVTPCHTHTFQSHLVTPCDTHTFQSHLVTPCDT 714
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 420 FQDHFIGXTLSPTFLSNLTSPSETESGKLGVVTSCST 310
FQ H + + TF S+L +P +T + + +VT C T
Sbjct: 717 FQSHLVTPCHTHTFQSHLVTPCDTHTFQSHLVTPCHT 753
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 420 FQDHFIGXTLSPTFLSNLTSPSETESGKLGVVTSCST 310
FQ H + + TF S+L +P +T + + +VT C T
Sbjct: 830 FQSHLVTPCHTHTFQSHLVTPCDTHTFQSHLVTPCHT 866
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 420 FQDHFIGXTLSPTFLSNLTSPSETESGKLGVVTSCST 310
FQ H + + TF S+L +P T + + +VT C T
Sbjct: 665 FQSHLVTPCHTRTFQSHLVTPCHTHTFQSHLVTPCDT 701
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 420 FQDHFIGXTLSPTFLSNLTSPSETESGKLGVVTSCST 310
FQ H + + TF S+L +P +T + + +VT C T
Sbjct: 691 FQSHLVTPCDTHTFQSHLVTPCDTHTFQSHLVTPCHT 727
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 420 FQDHFIGXTLSPTFLSNLTSPSETESGKLGVVTSCST 310
FQ H + + TF S+L +P T + + +VT C T
Sbjct: 817 FQSHLVTPCHTHTFQSHLVTPCHTHTFQSHLVTPCDT 853
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 420 FQDHFIGXTLSPTFLSNLTSPSETESGKLGVVTSCST 310
FQ H + + TF S+L +P T + + +VT C T
Sbjct: 704 FQSHLVTPCDTHTFQSHLVTPCHTHTFQSHLVTPCDT 740
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 420 FQDHFIGXTLSPTFLSNLTSPSETESGKLGVVTSCST 310
FQ H + TF S+L +P +T + + +VT C T
Sbjct: 882 FQSHLVTPCHMHTFQSHLVTPCDTHTFQSHLVTPCHT 918
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 420 FQDHFIGXTLSPTFLSNLTSPSETESGKLGVVTSCST 310
FQ H + + TF S+L +P T + + +VT C T
Sbjct: 843 FQSHLVTPCDTHTFQSHLVTPCHTRTFQSHLVTPCHT 879
>SB_31700| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=6.8)
Length = 126
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 401 PMKWSWKSRRTKPPFRSWR 457
P +WS S T PPF SWR
Sbjct: 48 PPRWSSNSPYTHPPFASWR 66
>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 110 RSISENATTLLEAHPDA-VPASGPVHPLQVNNSNA--QNTCTLTRN 238
R I + TLL +HPD +P +G +P S A + C LT++
Sbjct: 83 RHIQSSVDTLLTSHPDCLIPVTGDFNPTSTRLSAATIRRKCGLTQS 128
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +2
Query: 230 TRNQTEPTGALVAHNQVASIHFTNPLLVEQDVTTPSFPD-----SVSEGD-VKLDKKVGD 391
T + E LVA N + S+ + L++E V+ PSF V EGD + D ++
Sbjct: 2909 TEARDEGRYMLVAKNHLGSVSTSAELIIEPSVSPPSFRHRLTAVEVDEGDETRFDVRLKK 2968
Query: 392 SVXPMKWSWKSRR 430
++W + +R
Sbjct: 2969 EPTSVEWYKEQQR 2981
>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
Length = 707
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 492 YLVVGDRLSGWMEVLSSTAGTDLG 515
>SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75)
Length = 1056
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 407 KWSWKSRRTKPPFRSWRPAMVSSRSCTSK 493
KW+ + + PF+ WR A V S+ S+
Sbjct: 392 KWTQRENMRQTPFKYWRAAQVESKVWNSR 420
>SB_40757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 392 SVXPMKWSWKSRRTKPPFRSWR 457
SV P +W+ R PPF SWR
Sbjct: 11 SVFPRQWTALIIRAHPPFASWR 32
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 658 YLVVGDRLSGWVEVLSSTAGTDLG 681
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 1199 YLVVGDRLSGWVEVLSSTAGTDLG 1222
>SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)
Length = 1156
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 311 VEQDVTTPSFPDSVSEGDVKLDKKVGDSVXPMKWSWKSRRTKPPFRSWRPAMVSSRSCTS 490
VE+ V PS+ + V EGD DK D + + + R KP S PA+V +
Sbjct: 535 VERSVDLPSWLEEVKEGDKPKDKM--DGTVDIAFDVQG-RNKPSLHS-EPAVVETVKEEQ 590
Query: 491 KTEKP-LSWTK 520
P + W+K
Sbjct: 591 VENSPEIDWSK 601
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 677 YLVVGDRLSGWVEVLSSTAGTDLG 700
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Frame = +2
Query: 215 NTCTLTRNQTEPTG--ALVAHNQVASIHFTNPLLVEQDVTTPSF---PDS--VSEGDV-K 370
+T T+ + G +A N+V + T LLVE+ + P F P S + EG + K
Sbjct: 3019 HTLTIMNTTLDDEGEYTCIAKNKVGEVSCTAELLVEEGMRPPQFIVKPSSLQIMEGKMAK 3078
Query: 371 LDKKVGDSVXP-MKWSWKSRRTKP 439
+ +V P ++W R KP
Sbjct: 3079 FEARVSGLPGPEVEWLRDGRPIKP 3102
>SB_26636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 374 DKKVGDSVXPMKWSWKSRRTKPPFRSWRPAMVSSRSCTSKTEKPLSWTK 520
D++V + KW K R+ P S+ ++S + SK KP K
Sbjct: 90 DEEVSEVTGRPKWGLKKRKLATPDESFDKQVLSCLAKLSKANKPTETAK 138
>SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 223 HPYTQPN*TNRSSGRPQSSSIHPLHE 300
HP ++PN TN +G P +++ HP E
Sbjct: 61 HPTSEPNATNHPTGEPNATN-HPTGE 85
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 1291 YLVVGDRLSGWVEVLSSTAGTDLG 1314
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 832 YLVVGDRLSGWVEVLSSTAGTDLG 855
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 888 YLVVGDRLSGWVEVLSSTAGTDLG 911
>SB_56069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 428 RTKPPFRSWRPAMVSSRSCTSKTEKPLSWTKAV*VRD---HRGST*KGCSY*GSEV 586
+T P ++ A+VS E PL+W K + V D +G+T K +Y G EV
Sbjct: 42 KTARPLKTESAAVVSRELAGIYEEGPLTWPKVLMVDDGTEFKGATTKLLTYHGVEV 97
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 888 YLVVGDRLSGWVEVLSSTAGTDLG 911
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 317 YLVVGDRLSGWVEVLSSTAGTDLG 340
>SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 364
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 215 YLVVGDRLSGWVEVLSSTAGTDLG 238
>SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13)
Length = 776
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 633 YLVVGDRLSGWVEVLSSTAGTDLG 656
>SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 638
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 495 YLVVGDRLSGWVEVLSSTAGTDLG 518
>SB_23420| Best HMM Match : rve (HMM E-Value=2.7e-11)
Length = 388
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 280 YLIVGDQSSGWFSLVACKGASILG 209
YL+VGD+ SGW +++ + LG
Sbjct: 239 YLVVGDRLSGWVEVLSSTAGTDLG 262
>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 27.5 bits (58), Expect = 9.5
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Frame = -1
Query: 405 IGXTLSPTFLSNLTSPSETESGKLG--VVTSCSTSRGFVKW---MDAT*LWATRAPVGSV 241
IG L+ SNL P T K+G V+ + SR V W + W PV +
Sbjct: 234 IGSALTVLLASNLGIPISTTHCKVGSVVMVGRARSREVVDWKVFRNVVLAWVVTMPVAGL 293
Query: 240 WLRVRV-QVFWAFELLT*SGWTGPDAGTASGCASSSVVAFSL 118
+ R V Q F LL A S C SS+ SL
Sbjct: 294 FFRPFVSQSFGFLPLLRNFFGRMTRAPQDSSCLSSNTSNISL 335
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,731
Number of Sequences: 59808
Number of extensions: 406634
Number of successful extensions: 1740
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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