Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060821.seq
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical ...    42   4e-04
Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    28   4.8  
Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical
           protein W02F12.5 protein.
          Length = 463

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = +1

Query: 379 ESGRQRXADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETV 507
           + G     DE+V EIETDKT++ V AP  G I E  V+DG  V
Sbjct: 85  QKGDHVNEDELVAEIETDKTSVEVPAPQAGTIVEFLVEDGAKV 127



 Score = 30.7 bits (66), Expect = 0.90
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 203 SNAQNTCTLTRNQTEPTGALVAHNQVASIHFTNPLLVEQ-DVTTPSFPDSVSEGDVKLDK 379
           S+AQ +     +  EP    V     A+ H +   + +   V  P+F +S+SEGD++  K
Sbjct: 25  SSAQPSLQAKTSLLEPLVQNVRITSSANFHMSAVRMSDVITVEGPAFAESISEGDIRWLK 84

Query: 380 KVGDSV 397
           + GD V
Sbjct: 85  QKGDHV 90


>Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical
           protein F10C2.5 protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 297 VKWMDAT*LWATRAPVGSVWLRVRVQVFWAFELLT*SGWTGPDAGTASGCAS 142
           +K +DA  LW+TR+P+G V   + VQ            WT  D+G  +G  S
Sbjct: 228 LKALDA--LWSTRSPIGLVGNHINVQT---------GQWTATDSGIGAGVDS 268


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 67  NNYHKKAASK*KVSTFNKRKCYDAARSTSRRCTGVRASPSASSQQLKRPK 216
           N+     ++K K S  +KR+     +S+SRR   +R   S  SQ+ KR K
Sbjct: 42  NSRKSSRSNKSKRSQRSKRRSAQRKKSSSRRKKKLRKEKSRKSQRSKRKK 91


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
            protein B0511.12 protein.
          Length = 1634

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 116  ISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTGALVAHNQ 277
            +S   T+ +E+H       GP    +      QN     RN   P+G+  AH Q
Sbjct: 1215 VSPLTTSHIESHSQIHKVFGPTFTFEGFRQLGQNVWNRLRNHFGPSGSTSAHQQ 1268


>Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical
           protein F23B12.5 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 379 ESGRQRXADEVVLEIETDKTAIPVMAPGHGVIKELYVKDG 498
           + G Q    +++ EIETDK  +    P  G + ++ +++G
Sbjct: 100 KEGDQLSEGDLLCEIETDKATMGFETPEEGYLAKILIQEG 139


>Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical
           protein M106.2 protein.
          Length = 519

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 133 DAARSTSRRCTGVRASPSASSQQLKRPKYLHPYTQPN*TNRSSGRPQSSSIHPLHESPAC 312
           DAA   +R  T    S   +S+    P     Y  P+  + ++  PQ +  HP+    A 
Sbjct: 169 DAALQQARALTKSPISKKITSRSATAPSV---YAIPH--SSTASPPQIAITHPIQPPAAK 223

Query: 313 RARCDHSKFPG 345
           R+R +  K PG
Sbjct: 224 RSRIESEKSPG 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748,074
Number of Sequences: 27780
Number of extensions: 298220
Number of successful extensions: 982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)