Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060821.seq
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.35 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.35 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.4  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   4.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 209  AQNTCTLTRNQTEPTGALVAHNQVASIHFTNPLLVEQDVTTPSFP 343
            A+   T  R  T+ T  + A+NQV S   + PLL +     PS P
Sbjct: 1070 AELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPSIP 1114


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 209  AQNTCTLTRNQTEPTGALVAHNQVASIHFTNPLLVEQDVTTPSFP 343
            A+   T  R  T+ T  + A+NQV S   + PLL +     PS P
Sbjct: 1066 AELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPSIP 1110


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 422 SRRTKPPFRSWRP 460
           SRRT PP   W+P
Sbjct: 411 SRRTSPPPEDWKP 423


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 40  NVDFLGRKINNYHKKAASK 96
           ++D L RKI  Y+ +AASK
Sbjct: 380 SIDTLARKILGYNLEAASK 398


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 40  NVDFLGRKINNYHKKAASK 96
           ++D L RKI  Y+ +AASK
Sbjct: 380 SIDTLARKILGYNLEAASK 398


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 106 LPFILTLPFCG 74
           +P I+ LPFCG
Sbjct: 20  IPVIIQLPFCG 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,011
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)