Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060818.seq
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    28   1.4  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    28   1.4  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   2.4  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   5.6  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   7.4  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   9.7  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 327 VSRDIRTTTEARRPGTARNTRRPK 256
           V+R +RT+T  RRP T    R+PK
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPK 44


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = -3

Query: 304  HRGPAPRHSEKHSASEATELSVCCRERSETPRHRNKPSRPVWSRRSPHHFH 152
            H   +P  +    AS A   +   R +S+  RH    S    S+   HH H
Sbjct: 1260 HSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHH 1310


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 328 REQGHQDHHRGPAPRHSE-KHSASEATELSVCCRERSETPRHRNKPSRPVWSRRSP 164
           RE  H   HR    RH E KH   + +E     RE  +  RH      P+  ++ P
Sbjct: 20  RETNHSRRHRHHHSRHRESKHGRHDRSE-RPSSREAGDRSRHERFSKEPLEVKKLP 74


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 327 VSRDIRTTTEARRPGTARNTRRPK 256
           V++ +RT+T  RRP T + +R+PK
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPK 44


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 622 LCTTASQLITVFLGEINLELNFNGVLVLALQDLVHNLLCS 503
           L  TAS+     + ++ LE   +G +V++  D + NLLCS
Sbjct: 82  LAETASEKCKAVIEDLLLEDTEDGSIVVSKFDRISNLLCS 121


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -3

Query: 520 HNLLCSCSCCGDAWPSWRLSALLAKELELDHSR 422
           +NL   CS  G  W SW L   L       H +
Sbjct: 20  NNLCADCSTRGVQWASWNLGIFLCLRCATIHRK 52


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 475 SWRLSALLAKELELDHSRALSKSRLSSW 392
           SW LS ++ KEL++       +  L SW
Sbjct: 694 SWSLSEIVLKELDIKRQDINQEKALQSW 721


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 286 RHSEKHSASEATELSVCCRERSETPRHRNKPSRPVWSRRSPHH 158
           + ++K +   A  +      R +  R  N P  P W+ R+ HH
Sbjct: 865 KRNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHH 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,050
Number of Sequences: 5004
Number of extensions: 40655
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)