Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060818.seq
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071...    31   0.62 
06_03_1084 + 27483276-27483492,27483991-27484121,27484685-274847...    29   2.5  
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993...    29   3.3  
12_02_1275 - 27482784-27483272                                         28   5.8  
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    28   5.8  
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    28   5.8  

>04_03_0665 -
           18506221-18506271,18506331-18506401,18507097-18507169,
           18507476-18507805
          Length = 174

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 153 WKWCGLRRDQTGREG 197
           W WCGLRR + GR G
Sbjct: 65  WMWCGLRRSKAGRRG 79


>06_03_1084 +
           27483276-27483492,27483991-27484121,27484685-27484740,
           27484834-27484891,27484970-27485113,27485270-27485353,
           27485434-27485514,27485776-27485889,27486196-27486281,
           27486376-27486436,27487343-27487525,27487987-27488038,
           27488080-27488135,27488197-27488258,27488498-27488581,
           27488899-27489030,27490220-27490316
          Length = 565

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 424 CYGQAPALWPAAPRVSMMAKRLRNSYNYTTSCEQDLG 534
           C    PA  PA+P V++ ++ + ++ NY   CEQ LG
Sbjct: 53  CVRTEPAPRPASP-VAVRSRSVHSTENYKKGCEQRLG 88


>03_06_0034 +
           31197846-31198417,31198562-31198987,31199074-31199386,
           31199510-31199560
          Length = 453

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 248 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 156
           ++RL+  ALR  PSP   F++ L    +TPF
Sbjct: 39  SQRLVYAALRSLPSPRALFASLLSQLSATPF 69


>12_02_1275 - 27482784-27483272
          Length = 162

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 150 QWKWCGLRRDQTGREG 197
           +W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159


>04_04_1696 +
           35448667-35449641,35449726-35450562,35450667-35451001,
           35451371-35451497,35451594-35451752,35451872-35453053,
           35453164-35453424,35453513-35453761
          Length = 1374

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 586 LGEINLELNFNGVLVLALQDLVHNLLCSCSCCGD 485
           L  IN   NF+  L   LQD++ N   SCS CG+
Sbjct: 580 LYRINYYGNFDVSLGRYLQDILQNQNLSCSSCGE 613


>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 483 LGHHGDSRRCWPKSWSLTIAGHLASRD 403
           L    D +  WP  W ++ AGH+++ D
Sbjct: 76  LQRRADCKDTWPGQWDISSAGHISAGD 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,745,546
Number of Sequences: 37544
Number of extensions: 336504
Number of successful extensions: 1175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)