Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060818.seq
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_54677| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2) 28 5.9
SB_59318| Best HMM Match : WSC (HMM E-Value=0.00068) 28 5.9
SB_2064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023) 28 7.8
SB_25200| Best HMM Match : RVT_1 (HMM E-Value=1.7) 28 7.8
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 349 TLRAVQSREQGHQDHHRGPAPRHSEKHSASEATELSVCCRERSETPRHRNKPS 191
T+ V+ E+ +D +GP R + H E+ R+RS P +R S
Sbjct: 1092 TIALVERLEEVERDGRQGPDSRRRQTHERRGGKEVREAIRDRSSQPDYRRADS 1144
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Frame = -3
Query: 334 QSREQGHQD---HHRGPAP------RHSEKHSASEATELSVCCRERSETPRHRNKPSRPV 182
+ E+ H++ HHR +P R + S S A R RS +PR R + P
Sbjct: 182 EEEEEEHKESPVHHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPR 241
Query: 181 WSRR----SPHH 158
RR SPHH
Sbjct: 242 RRRRSRSPSPHH 253
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = -3
Query: 334 QSREQGHQDHHRGPAPRHSEKHSASEATELSVCCRERSETPRHRNKPSRPVWSRRSPHHF 155
+SR + + R +PR + + S R RS +PR R+ SR RR
Sbjct: 225 RSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRS 284
Query: 154 H 152
H
Sbjct: 285 H 285
>SB_54677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 471 HDGQASPQQLQLHNKL*TRSWSARTSTPLKLSSRFISPRXTVISWEAVVHNNM 629
HDG+ P +Q+ +L R + P+ + F+SP + + A +N +
Sbjct: 64 HDGREMPVHIQIARRLIERGANPNLRVPVNNGAEFVSPGRSPLECVADYYNQL 116
>SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)
Length = 76
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 520 HNLLCSCSCCGDAWPSWRLS-ALLAKELELDHSR 422
H LL + + C WP+WR S +++ + EL +R
Sbjct: 15 HALLTAATMCDRCWPTWRPSRSVVRRSSELSMAR 48
>SB_59318| Best HMM Match : WSC (HMM E-Value=0.00068)
Length = 553
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = +1
Query: 103 MLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSLRTPSVSRC 282
+++ Q N SSS+S ++ NGV+ ++ Q + + + ++ S+ S+L L P + C
Sbjct: 31 IVLSQRNKSSSLSLEFSYNGVNWLQ-MQEQGSFKLELVIIAKFSSRESSLRLVIPGMLSC 89
Query: 283 AWAP 294
+ P
Sbjct: 90 LYVP 93
>SB_2064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -3
Query: 325 EQGHQDHHRGPAPRHSEKHSASEATELSVCCRERSETPRH 206
++ H R P P H K + ++E CC+ P+H
Sbjct: 18 QKSHVKIRRFPPPNHEVKFNVLRSSEDECCCKHTFLFPKH 57
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 334 QSREQGHQDHHRGPAPRHSEKHSASEATELSVCCRERSETPRHRNKPSR 188
+++E+G Q + PA RHS S SE++ LS C S HR R
Sbjct: 3161 KAKEKGKQSKEKDPARRHS---SGSESS-LSQCSTSSSPKLSHRGSFKR 3205
>SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)
Length = 650
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 343 RAVQSREQGHQDHHRGPAPRHSEKHSASEATELSVCCRERSETPRHR 203
R +Q+RE+ + + P E+ AS + LSV C E P HR
Sbjct: 125 RELQTREESTSEENHQPVAVPMEQSGASASPALSVQCIETQ--PEHR 169
>SB_25200| Best HMM Match : RVT_1 (HMM E-Value=1.7)
Length = 371
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 522 TRSWSARTSTPLKLSSRFISPRXTVISWEAVVHNNMMYLRVP-GVLQS 662
T +W+ S PL+LS R ++ ++ W +H L +P G++QS
Sbjct: 80 TDAWNGYHSVPLRLSDRHLTTYNSI--WPLALHMGTPRLPLPRGLIQS 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,904,221
Number of Sequences: 59808
Number of extensions: 376048
Number of successful extensions: 1195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -