Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060818.seq
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 31 0.55
U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protei... 31 0.55
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 31 0.55
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 31 0.55
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 31 0.73
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical... 28 5.1
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 28 5.1
AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical ... 27 9.0
AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 340 AVQSREQGHQDHHRGPAPRHSEKHSASEATELSVCCRERSETPRHRN 200
A Q++EQ HQ HH+ P+ + S E + + C +R + H N
Sbjct: 326 ARQAQEQHHQQHHQPDQPQQQPQRS-QEGSLPKMSCSQRDDKSCHAN 371
>U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protein
1, isoform b protein.
Length = 310
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 289 PRHSEKHSASEAT--ELSVCCRERSETPRHRNKPS 191
P HS++HS S+ T S C R SE+PR+ ++ S
Sbjct: 150 PYHSQRHSFSDCTTDSSSTCSRLSSESPRYTSESS 184
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 289 PRHSEKHSASEAT--ELSVCCRERSETPRHRNKPS 191
P HS++HS S+ T S C R SE+PR+ ++ S
Sbjct: 373 PYHSQRHSFSDCTTDSSSTCSRLSSESPRYTSESS 407
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 289 PRHSEKHSASEAT--ELSVCCRERSETPRHRNKPS 191
P HS++HS S+ T S C R SE+PR+ ++ S
Sbjct: 463 PYHSQRHSFSDCTTDSSSTCSRLSSESPRYTSESS 497
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 334 QSREQGHQDHHRGPAPRH-SEKHSASEATELSVCCRERSETPRHRNKPSRP 185
Q+ H HH PAPRH S H E S R +S +P N+ RP
Sbjct: 31 QNGNSHHHHHHLPPAPRHLSSSHHQIETISGSSKLRAQSGSPA-LNRKKRP 80
>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform c
protein.
Length = 1310
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 169 SVETKQVEKVYSGDGASLSAPGSKRSALSLRTPSVSRCAWAPGL 300
S+ ++ E G +S+ +PGS S P + R + APG+
Sbjct: 1184 SIHSEDTESTDYGASSSMYSPGSSNRISSQVDPPIGRLSSAPGI 1227
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 169 SVETKQVEKVYSGDGASLSAPGSKRSALSLRTPSVSRCAWAPGL 300
S+ ++ E G +S+ +PGS S P + R + APG+
Sbjct: 2330 SIHSEDTESTDYGASSSMYSPGSSNRISSQVDPPIGRLSSAPGI 2373
>AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical
protein C09D4.4c protein.
Length = 916
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 112 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGAS----LSAPGSKRSALSLRTPSVSR 279
+ L+CS S+S+ +G TK +++ S DG + P S+ + S P SR
Sbjct: 423 KSLDCSQSLSRKLDGGVTSRSRTKTLKETTSTDGGGGLLLKNIPNSQENNFSPEFPGPSR 482
>AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical
protein C09D4.4a protein.
Length = 913
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 112 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGAS----LSAPGSKRSALSLRTPSVSR 279
+ L+CS S+S+ +G TK +++ S DG + P S+ + S P SR
Sbjct: 420 KSLDCSQSLSRKLDGGVTSRSRTKTLKETTSTDGGGGLLLKNIPNSQENNFSPEFPGPSR 479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,400
Number of Sequences: 27780
Number of extensions: 261540
Number of successful extensions: 883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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