Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060818.seq
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.5  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 347 GDRRGCEPRYPGHPQPRRQSRL 412
           G   GC+ R    P PR+Q  L
Sbjct: 165 GSSDGCDARKKKGPTPRQQEEL 186


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 520 HNLLCSCSCCGDAW 479
           H L C C  CG A+
Sbjct: 39  HTLPCKCHLCGKAF 52


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
 Frame = -3

Query: 523 VHNLLCSCSCC----GDAWPSWRLSALLAKELELD 431
           +H+L      C    GD W SW     +  EL LD
Sbjct: 370 IHHLARHAVACFLTRGDLWISWEEGMKVFDELLLD 404


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 421 PCYGQAPALWPAAPRVSMMAKRLRNSYNYT 510
           PC      +    P  + MAK    +YNY+
Sbjct: 235 PCIFDNATIVNNGPEAAKMAKAFTYTYNYS 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,379
Number of Sequences: 438
Number of extensions: 2984
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)