Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060818.seq
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65670.1 68414.m07452 cytochrome P450 family protein similar ...    29   3.6  
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea...    28   4.8  
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC...    28   6.4  
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC...    28   6.4  
At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam...    28   6.4  

>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
          Length = 482

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 275 LAVPGRRASVVVLMSLLTALHRPEGDRRGC 364
           L   G + SV+  + LLT  H  EG RRGC
Sbjct: 137 LGSQGLKLSVMQDIDLLTRTHMEEGARRGC 166


>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
           family protein contains seven WD-40 G-protein beta
           repeats; similar to RA-regulated nuclear
           matrix-associated protein (GI:14161320) {Homo sapiens}
          Length = 535

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 82  LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSLR 261
           L +++ T   Q+ +  SS   Y N   +  + T + +K  +   +SLS+  S+   +  R
Sbjct: 444 LEMNRETESPQKHSSLSSDDDYNNDQSMPIIRTPESQKKKTSSSSSLSSLSSEEDIICER 503

Query: 262 TPSVS 276
           TP  +
Sbjct: 504 TPETT 508


>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 292 APRHSEKHSASEATELSVCCR--ERSETPRHRNKPSRPVWSRRSP 164
           +PR S     S A E+S   R  ERS +PR    P  P   + SP
Sbjct: 220 SPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASP 264


>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 292 APRHSEKHSASEATELSVCCR--ERSETPRHRNKPSRPVWSRRSP 164
           +PR S     S A E+S   R  ERS +PR    P  P   + SP
Sbjct: 220 SPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASP 264


>At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam
           NUDIX domain [PF00293]; very low similarity to Chain A
           and Chain B of Escherichia coli isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase
           [gi:15826361] [gi:15826360]
          Length = 772

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 468 DSRRCWPKSWSLTIAGHLASRD 403
           D +  WP  W ++ AGH+++ D
Sbjct: 54  DDKDSWPGQWDISSAGHISAGD 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,813
Number of Sequences: 28952
Number of extensions: 242453
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)