Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060816.seq
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   1.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   1.5  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   6.0  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 501 RFAIDDLPLSSRERKNSTKCC 563
           ++  +DLP ++ +  N  KCC
Sbjct: 171 KYKKEDLPAAAGKASNGNKCC 191


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 330 PLKHDYKYTGVL-TVPDPAVPAXMKVRFPLSVAGSA 434
           P+   YK+  V   VP P VP      FP + + SA
Sbjct: 192 PVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSA 227


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 330 PLKHDYKYTGVL-TVPDPAVPAXMKVRFPLSVAGSA 434
           P+   YK+  V   VP P VP      FP + + SA
Sbjct: 192 PVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSA 227


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 324 LTPLKHDYKYTGVLTVPDPAVPAXMKVRFPLSVAGS 431
           +TP+ H  +Y G +  P P+     +    + V+GS
Sbjct: 43  VTPVIHVLQYPGCVPKPIPSFACIGRCASYIQVSGS 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,591
Number of Sequences: 336
Number of extensions: 2991
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)