Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060816.seq
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    29   0.52 
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    28   0.91 
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    26   4.8  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   6.4  

>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 230 STASHCITSTLAGPTSLDISAGTGLSTFHTRIDALETRLQIYWCPDST*PRCSCXDEGSI 409
           ST S  + S  AG TS  +S+GT        I     R   Y  P ST P+C   D+G  
Sbjct: 638 STPSDVVGSD-AGDTS-KVSSGTSTPRMAAPIARRSNRHHPYSRPSSTRPQCQLEDQGIC 695

Query: 410 -PSER 421
            P++R
Sbjct: 696 DPNDR 700


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +1

Query: 259 FSRTD-EPGHISWNRTLNIS 315
           F+R D EP  ISWNRTL+++
Sbjct: 511 FARLDIEPSTISWNRTLDVN 530


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -3

Query: 576 NAFINNILSSSFVLERIVADRLWRTAYLLTSEDRGV-CCVSPLPKLCSLLSRQRSEGIEP 400
           N  + N++   +  ER   +R  R A+   + DR V   ++ +P+   +L+RQR E    
Sbjct: 148 NVAVENMVEMGY--ERSEVERAMRAAF--NNPDRAVEYLLTGIPE--DILNRQREESAAA 201

Query: 399 SSLQEQRGQVLS 364
            + Q+Q+ + L+
Sbjct: 202 LAAQQQQSEALA 213


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
 Frame = +2

Query: 149  GSCPIVEPMSGFEMNRLLGVWYVIQKTSTASHCITST--LAGPTSLDISA--GTGLSTFH 316
            G+  +VEP +G     ++        T  A    + T  +  PT+  +++  G+G S F 
Sbjct: 1041 GTVEVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEIVVPTAGTVTSTTGSGTSWFT 1100

Query: 317  TRIDALETRLQIYWCPDST*PRCSCXDEGSIPS 415
            T + A  TR         T P CS       P+
Sbjct: 1101 TTVPATGTRSGSVIVVSPTAPACSSTPFAECPN 1133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,179
Number of Sequences: 5004
Number of extensions: 47555
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)