Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060816.seq
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349...    29   2.2  
12_02_0776 - 23064167-23064239,23065214-23065518,23065614-230657...    28   5.0  
11_06_0272 + 21806681-21806908,21806991-21807233,21807318-218074...    28   5.0  
11_01_0709 - 5821246-5821449,5821517-5821634,5821720-5821812,582...    27   8.7  
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    27   8.7  

>10_08_0340 -
           16934317-16934478,16934569-16934745,16934842-16934940,
           16935025-16935225,16935389-16935409,16935554-16935661,
           16935749-16936130,16936693-16936912,16938673-16938827,
           16938960-16939183,16939648-16939707
          Length = 602

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 44  SXXYVTRKYCNKMWKLTVLGVFLTVTYVYSHT 139
           S  YV+R Y   MW L+ L + LT TY  S T
Sbjct: 294 SRPYVSRWYMRMMWPLSWLSMVLTWTYGSSFT 325


>12_02_0776 -
           23064167-23064239,23065214-23065518,23065614-23065727,
           23065812-23065918,23065997-23066143,23066227-23066326,
           23066421-23066522,23066702-23066776,23066973-23067152,
           23067266-23067355,23067435-23067559,23067847-23067910,
           23067993-23068197,23068818-23068966
          Length = 611

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 267 PAKVDVMQWDAVEVFCITYHTPSNLFISNPLIGSTMGHDPK 145
           PA + ++    + V  + + T  ++FI  P++G  M H P+
Sbjct: 160 PAALAILHPSLLPVAIVGFFTKLSVFIGAPIVGKLMDHFPR 200


>11_06_0272 +
           21806681-21806908,21806991-21807233,21807318-21807444,
           21807822-21808036
          Length = 270

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 248 ITSTLAGPTSLDISAGTGLSTFHTRIDALETRL 346
           I++T A P+ +D +AGTG +     + AL+ +L
Sbjct: 43  ISATAAAPSGVDYAAGTGAAADDDAVAALKVKL 75


>11_01_0709 -
           5821246-5821449,5821517-5821634,5821720-5821812,
           5822065-5822198,5822281-5822559,5822645-5822730,
           5822814-5822906,5822998-5823090,5823192-5823299,
           5824034-5824060,5824538-5824766
          Length = 487

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 569 LSTTFCRVLSFSRG*WQIVYGEPLTF*QVKTAAYVV 462
           L    C  L+F  G W   YG  LTF  V+ A+++V
Sbjct: 422 LIVEICDPLAFKVGGWVTEYGNILTFATVRGASHMV 457


>03_06_0642 + 35239658-35240083,35240167-35240238,35240305-35240919,
            35241253-35241435,35241604-35241663,35241733-35241936,
            35242497-35242745,35243609-35243707,35243760-35243858,
            35244463-35244480,35244668-35244862,35244981-35245073,
            35245265-35245531,35245884-35246102
          Length = 932

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
 Frame = -3

Query: 561  NILSSSFVLERIVADRLWRTAYLLTSEDRGVCCVSPLPKLCSLLSRQRSE-GIEPSSLQE 385
            N+LS S + + ++++ L   A  + +EDR +  V     L  L + Q +E  I P+ L  
Sbjct: 819  NLLSVSKISDYVLSNELVSMALAMVAEDRQINDV-----LEELFAEQGNEMQIRPADLYL 873

Query: 384  QRGQVLSGHQYICSRVSRASIRV*NVESPVPADMSRLVGPAKVDVMQWDAVEVFCI 217
            +  + L+  + +     R  I +      V A+ + +  P KV   +W A +VF +
Sbjct: 874  REDEELNFFEVMLRGRQRKEIVI--GYRLVDAERAIINPPDKVSRRRWSAKDVFVV 927


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,322
Number of Sequences: 37544
Number of extensions: 319894
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)