Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060816.seq
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic acety...    29   3.3  
U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine r...    29   3.3  
Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 276 AWTYQLEQDSQHFILGLTPLK-HDYKYTGVLTVPD 377
           +WTY  E+   H+   +  ++ HDY Y+G+  V D
Sbjct: 205 SWTYNSEEVRLHWYNNIQAVQLHDYSYSGIWDVID 239


>U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine
           receptor protein 2 protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 276 AWTYQLEQDSQHFILGLTPLK-HDYKYTGVLTVPD 377
           +WTY  E+   H+   +  ++ HDY Y+G+  V D
Sbjct: 205 SWTYNSEEVRLHWYNNIQAVQLHDYSYSGIWDVID 239


>Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC434.3 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 342 DYKYTGVLTVPDPAVPAXMKVRFPLSVA 425
           DY + G    P P  P+ + VRFP+S A
Sbjct: 192 DYLFDGGFDFPIPLAPSGVGVRFPMSGA 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,775
Number of Sequences: 27780
Number of extensions: 280406
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)