Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060816.seq
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.75 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.2  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 591 IRRSFNAFINNILSSS 544
           I+R  N F+NNIL++S
Sbjct: 271 IKRKHNVFVNNILAAS 286


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 555 LSSSFVLERIVADRLWRTAYLLTSEDRGVC 466
           ++S++ +E  + DRLW     L +  R VC
Sbjct: 119 ITSAYKIEIDMCDRLWVLDSGLINNVRSVC 148


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 327 TPLKHDYKYTGVLTVPDPAVPAXMKVRFPLSVAGS 431
           TP+ H  +Y G +  P P+     +    L V+GS
Sbjct: 32  TPVIHFLQYPGCVPKPIPSYACRGRCSSYLQVSGS 66


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -1

Query: 449 QNCVAC*AGNAQRESNLHXC 390
           Q C  C  G  + E+  H C
Sbjct: 260 QECTECPIGKFKHEAGSHSC 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,806
Number of Sequences: 438
Number of extensions: 3571
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)