Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060816.seq
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09860.1 68414.m01110 purine permease-related low similarity ...    28   4.1  
At2g29250.1 68415.m03554 lectin protein kinase, putative similar...    28   5.4  
At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3) ...    27   7.2  
At5g35940.1 68418.m04325 jacalin lectin family protein similar t...    27   9.5  
At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein si...    27   9.5  

>At1g09860.1 68414.m01110 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 383

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +2

Query: 77  KMWKLTVLGVFLTVTYVYSHTYHLGSCPIV 166
           ++W + +LG+ L V+ +++   H+G+ P+V
Sbjct: 296 QVWAVGLLGLVLLVSGLFADVVHMGASPVV 325


>At2g29250.1 68415.m03554 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 623

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 303 SQHFILG----LTPLKHDYKYTGVLTVPDPAVPAXMKVRFPLSVAGSASYTVL 449
           S HF+LG    +     D+  T + ++PDP  P       P+SV  ++S T+L
Sbjct: 252 SSHFVLGWSFSIEGKASDFDITKLPSLPDPLPPLSPSPSPPVSVMKNSSNTML 304


>At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3)
           identical to BEL1-like homeodomain 3 (GI:13877515)
           [Arabidopsis thaliana]
          Length = 524

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 492 LTSEDRGVCCVSPLPKLCSLLSRQRS-EGIEPSSLQEQRGQVLSGHQYICSRVSRASI 322
           L ++ +    VSP       LS Q S   + PS++ ++ G+ LS HQ+   ++  +S+
Sbjct: 85  LGNQIQSAVSVSPFQYHYQNLSNQLSYNNLNPSTMSDENGKSLSVHQHHSDQILPSSV 142


>At5g35940.1 68418.m04325 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 444

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 224 KTSTASHCITSTLAGPTSLDISAGTGLSTFHTRIDALETRLQIYWCPDST*P 379
           KTS     +  T+ G   L  S G  +  FH R+ +    +  Y+ P S  P
Sbjct: 243 KTSNGRTLVIGTVTGTKFLLESKGNAIVGFHGRVGSCVDSIGAYYAPFSPSP 294


>At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein
           similar to beta-galactosidase (lactase) from Alteromonas
           haloplanktis [SP|P81650]; contains Pfam glycoside
           hydrolase domains PF02836, PF02837, PF02929, PF02930
          Length = 1107

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +2

Query: 152 SCPIVEPMSGFEMNRLLGVWYVIQKTSTASHCITSTLAGPTSLDISAGTGLSTFHTRI 325
           S P+++P + FEM    G W+     S A     +  A   +L  S   G     T+I
Sbjct: 718 SIPVIKPQNSFEMEWKSGPWFSFWNDSNAGELFLTINAKLLNLTRSLEAGHLLSSTQI 775


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,594,834
Number of Sequences: 28952
Number of extensions: 253592
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)