Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060815.seq
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    61   1e-10
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    39   7e-04
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    31   0.15 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    29   0.78 
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    28   1.4  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    28   1.4  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    27   2.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   9.7  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 32/72 (44%), Positives = 42/72 (58%)
 Frame = +2

Query: 290 GRVSSARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 469
           G VS+A  + KTA AP   V  L+     + +      RYKGI + F R   E+G++S W
Sbjct: 34  GGVSAA--VSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLW 91

Query: 470 RGNFANVIRYFP 505
           RGN ANV+RYFP
Sbjct: 92  RGNTANVLRYFP 103



 Score = 33.5 bits (73), Expect = 0.028
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +1

Query: 502 PDQALNFAFKDKYKQVF 552
           P QALNFAFKDK+K++F
Sbjct: 103 PTQALNFAFKDKFKKMF 119


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 22/67 (32%), Positives = 37/67 (55%)
 Frame = +2

Query: 305 ARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 484
           A  + +TAV+P   + K++ QVQ+       ++ Y  +    V+I   +GL+ F+RGN  
Sbjct: 30  AATVSRTAVSPLERM-KIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGT 81

Query: 485 NVIRYFP 505
           N +R FP
Sbjct: 82  NCLRAFP 88



 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 407 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 505
           YK I  A   I K +G+  F+RG  +N+++  P
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIP 298


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 272 KGLSWAGRVSSA--RRLPKTAVA-PNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIP 442
           K L W G++  A   +     +A P+  V   L Q    S  I    +Y G++  F  + 
Sbjct: 268 KVLDWGGKLGGAGIAKFMAAGIAYPHEVVRTRLRQ----SPSINGTPKYTGLIQCFKLVW 323

Query: 443 KEQGLLSFWRGNFANVIRYFP 505
            EQG++  + G  A+++R  P
Sbjct: 324 MEQGIVGLYGGLTAHLLRVVP 344


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 392 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 490
           A    Y    DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 404 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 499
           +Y G VD F +I K++ +L+ + G  A + R+
Sbjct: 140 KYNGTVDCFTKIVKQERILALYNGFEATMWRH 171


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 344 SVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 505
           +V +  LQ Q  S   A    Y G +D F +  K +G    ++G   N+++  P
Sbjct: 357 NVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 383 KQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 475
           + ++A + YK  +    +I  + GLL FW G
Sbjct: 232 QSLSASKEYKNSIHCAYKILTQDGLLRFWSG 262


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +1

Query: 43  FKKGHTTYL---CASVXYEIYSKSPVSKNQELSGFVNPP 150
           FKK    Y    C     +  S SP+ +N  L  F+ PP
Sbjct: 561 FKKSKIRYAPDRCEQELQKSKSNSPIQQNVPLQQFITPP 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,069
Number of Sequences: 5004
Number of extensions: 53669
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)