Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060815.seq
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 41 0.001
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 38 0.005
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.013
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 35 0.067
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 32 0.48
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 32 0.48
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 31 0.63
SB_4191| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 30 1.5
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.5
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 30 1.9
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.5
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 2.5
SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 4.4
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 28 5.9
SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5) 28 5.9
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 28 7.7
SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/72 (43%), Positives = 39/72 (54%)
Frame = +2
Query: 290 GRVSSARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 469
G +A + KTA AP V L+ + K D YKG++D R + +G LSFW
Sbjct: 14 GLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFW 73
Query: 470 RGNFANVIRYFP 505
RGN AN IRYFP
Sbjct: 74 RGNLANCIRYFP 85
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 404 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 496
+YKG +D ++I K++G +S +G AN++R
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILR 278
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 502 PDQALNFAFKDKYKQVF 552
P QALNFAFKD+ K +F
Sbjct: 85 PTQALNFAFKDQVKALF 101
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/73 (36%), Positives = 47/73 (64%)
Frame = +2
Query: 287 AGRVSSARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 466
AG ++ A + +T+V+P V K+LLQ+Q + ++KG++ ++I KE+G+L +
Sbjct: 40 AGGIAGA--VSRTSVSPLERV-KILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGY 90
Query: 467 WRGNFANVIRYFP 505
++GN NVIR FP
Sbjct: 91 FKGNGTNVIRIFP 103
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 362 LQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 505
L+V V Q+ + G++ F + K +G+ +FW+GN + IR FP
Sbjct: 79 LEVVKVLAQVGTQEAKPGLIRTFASVYKREGIKAFWKGNGVSCIRLFP 126
Score = 34.3 bits (75), Expect = 0.089
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 347 VSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 505
V K L VQHV+K A YKG+ A I +E+G+L+ ++G + + FP
Sbjct: 175 VIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKGVTPSFLGLFP 224
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +2
Query: 320 KTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 499
+TA AP + K+LLQVQ A+ GIV F + +E G+ S WRGN ANVI+
Sbjct: 151 RTATAPLDRL-KVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGNGANVIKI 203
Query: 500 FP 505
P
Sbjct: 204 AP 205
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 362 LQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 505
L+V I +Y+G++ A I +++G+ SF+RG F +++ P
Sbjct: 251 LEVLKTRLAIRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIP 298
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 302 SARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 472
+A + KTA AP V L+ + K YKG+VD +R + +G+ SFWR
Sbjct: 19 AAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 37.1 bits (82), Expect = 0.013
Identities = 25/85 (29%), Positives = 46/85 (54%)
Frame = +2
Query: 251 PIRSRSAKGLSWAGRVSSARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAF 430
P S + +++AG V+ ++P +AP V K+ LQ+Q +K+ + Y+G VD
Sbjct: 27 PDGSNTIGQIAFAGSVAGLAQVP--LIAPVDLV-KIKLQMQTEAKR-STRSVYRGPVDCL 82
Query: 431 VRIPKEQGLLSFWRGNFANVIRYFP 505
V++ + +GL ++GN +R P
Sbjct: 83 VKLYRSRGLAGCFQGNTVTAVRDIP 107
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 404 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYF 502
RYKG++D ++ KE+G++ F RG + ++R F
Sbjct: 170 RYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGF 202
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 34.7 bits (76), Expect = 0.067
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 389 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 505
I ++Y G+++AF RI +++G+ +F+RG +I P
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMP 57
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 31.9 bits (69), Expect = 0.48
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 404 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 505
+Y G+ +I +++GL +++GN N++R P
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVP 623
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 347 VSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 475
V K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 444 VIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 31.5 bits (68), Expect = 0.63
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 407 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 496
Y + +A R+ KE+G+L+ WRG +R
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVR 64
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 407 YKGIVDAFVRIPKEQGLLSFWRG 475
YKG +D RI + +G+ + W+G
Sbjct: 133 YKGTMDVLARIVRNEGVFALWKG 155
>SB_4191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 464 MKGDPAPWGCGRRRRRYPCNAG-RRRSAC*RAVLG-AAALTRSDW 336
+ G W C + RR+P AG S C A L A L R DW
Sbjct: 54 LPGKRGSWNCDNKGRRFPNKAGDPLESTCRHASLALAVVLQRRDW 98
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 419 VDAFVRIPKEQGLLSFWRG 475
+DA ++IP+ +GL S WRG
Sbjct: 64 IDALIKIPRYEGLSSLWRG 82
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 272 KGLSWAGRVSSARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 451
+G++ G R+ +T P R +L+ Q Q +D RY+G +D+F + +
Sbjct: 264 RGITLEGNDRGKRQSRQTVACPERC--GVLMASQGKRGQYMSDARYRGHLDSFRGDARYR 321
Query: 452 GLLSFWRGN 478
G L +RG+
Sbjct: 322 GHLDSFRGD 330
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 416 IVDAFVRIPKEQGLLSFWRGNFANVIRYFP 505
++ AF I + +GLL++++GN A ++R FP
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFP 42
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/97 (21%), Positives = 40/97 (41%)
Frame = +1
Query: 100 KSPVSKNQELSGFVNPPIRRCGRQTSQLPNNISTLSERIHIIRNKNVETFADPVAFG*GT 279
KSP S++ L G P + + + + + + ++H + + + P
Sbjct: 1057 KSPASEDSILKGVTLPSLTSVASAFTSMADRVKPGTHQVHSPDDSSFKGGHIPSVSS--A 1114
Query: 280 FLGWAGIFRPPSSKDRRSTQSERVKAAAPSTARQQAD 390
F AG+ RP S +DR S+ ++ PS + D
Sbjct: 1115 FSAMAGMIRPGSRQDRCSSADTIEESPMPSATLDEND 1151
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 359 LLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 475
L++++ + +I YK + AF +I K++G L W G
Sbjct: 137 LVKIRFQAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTG 175
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 592 VTPRTASSCQRRRGTPACTCP 530
V+ R S CQRRRG C CP
Sbjct: 936 VSCRFYSKCQRRRGGAQCVCP 956
>SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 232 CFELCESFHLGLKYCSEVGKFAGHTAGLGDSRN 134
C C S G C+ + ++ HTA LG SR+
Sbjct: 91 CVSTCSSNAYGYDVCNTLRHYSRHTAALGTSRH 123
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 304 RPPSSKDRRSTQSERVKAAAPSTARQQADRRRPALQGYRR 423
+PP S S+ S R+ + P+TA ++ R L+ RR
Sbjct: 690 KPPPSNQHNSSSSHRISSTTPNTACTTSNLPRMPLERIRR 729
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 358 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 459
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 358 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 459
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 358 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 459
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 358 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 459
A+ S RQQ R RP GY +R R +P+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)
Length = 473
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 369 TWSSSFDTLRLGATAVFGRRRAEDTRPA-QESPLAERDRIGEG 244
++ + +R A FGR+ +D+RP +ES L E + G G
Sbjct: 215 SFQGDYARVRYAAAGFFGRQAIDDSRPTLEESRLHEGTKYGYG 257
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +2
Query: 323 TAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYF 502
TAV P + + ++Q+ + A++ YK +D F ++ + +G + +RG ++
Sbjct: 929 TAVYP---IDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGVS 985
Query: 503 P 505
P
Sbjct: 986 P 986
>SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 284 WAGRVSSARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQR 406
++GRV + RRL K NR+ + L VQHV +A++ +
Sbjct: 164 YSGRVEAGRRLAKWNRL-NRAKKETLRVVQHVGSPVASESQ 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,063,945
Number of Sequences: 59808
Number of extensions: 424203
Number of successful extensions: 1330
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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